Pseudomonas sp. MT-1: MT1_1037
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Entry
MT1_1037 CDS
T10396
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psmt Pseudomonas sp. MT-1
Pathway
psmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MT1_1037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmt03019
]
MT1_1037
Enzymes [BR:
psmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MT1_1037
Messenger RNA biogenesis [BR:
psmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MT1_1037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_22
DUF1923
Motif
Other DBs
NCBI-ProteinID:
BAP78214
LinkDB
All DBs
Position
1157808..1159133
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AA seq
441 aa
AA seq
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MTFASLGLIDQLLRTLESLEYTQPTPVQAKAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QRLLHEGPQVASNSVRALVLVPTRELAEQVHESFRTYGQDLPLRTYAVYGGVSINPQMMA
LRKGIDVLVATPGRLLDLYRQNAVKFSQVQALVLDEADRMLDLGFSEELNALFSALPKKR
QTLLFSATFSDPIRQMAQELLRDPLSIEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA
EKRWGQVLVFVRTRKGVDQLVDELQAQGISSDAIHGDKPQASRLRALERFKAGEVQVLVA
TDVAARGLDIHDLPQVVNFDLPTVAEDYVHRIGRTGRAGATGEAVSLVAADEVDQLAAIE
TLIQQVLPRHDEPGFVPDHRVPTTQPGGQIIKKPKKPKKPKELAGKGRVHLGNWFDESEK
PNAKPIRKVPSLGGTKPTKKR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcctctttgggcctgatcgatcagctgctacgcaccctcgaatcgcttgaa
tacacccagccgacgccggtccaggccaaagcgattccggctgtgctcaagggccgcgac
ctgatggccgccgcgcagaccggcaccggcaagactgcgggtttcgccttgccgctgttg
cagcggctgctgcatgaggggccgcaagtggcgagcaattcggtccgcgcgctggtgctg
gtgccgacccgtgagctggccgagcaggtgcacgagagtttcagaacctacggccaagac
ctgccgctgcgcacctatgcggtctacggcggcgtcagcatcaatccgcagatgatggcc
ttgcgcaagggcatcgacgtgctggtcgccacacccgggcggttgctggatctgtatcga
cagaacgcggtgaagttcagccaggtgcaggcgctggtgctggacgaggccgatcggatg
ctcgacctcggcttttccgaagagctgaacgcgctgttcagtgcactcccgaaaaagcgg
cagaccttgctgttttctgcgaccttctccgacccgattcggcagatggcgcaggagctg
ctgcgtgacccgctgtccatcgaggttagcccgcgcaatgctgcggcgaaaaccgtgaag
cagtggctggtgccggtggacaagaagcgcaagtccgagctgtttctgcacttgctggcg
gaaaagcgctgggggcaggtgctggtgttcgtcaggacgcgcaagggcgtcgaccagctg
gtggatgagttgcaggcgcagggcatcagcagcgacgcgatccatggcgacaagccgcag
gcgtcgcggttgcgcgcgctggaacgtttcaaagcgggcgaagtgcaggtgctggtggcc
accgatgtggccgcgcgaggcctggatatccatgacctgccacaggtggtcaatttcgac
ctgcctaccgttgccgaggactatgtgcaccgtatcggccggacaggccgggcgggcgca
acgggcgaggccgtgtcgctggtcgccgccgatgaggtcgatcagctcgcagccatcgaa
acgttgattcagcaagttctgccgcgccacgacgagccgggtttcgtcccggatcatcga
gtgccgaccacccagccgggcgggcagatcatcaagaaaccgaaaaagccgaagaagcct
aaagagttggctggcaaaggccgtgttcatctgggcaactggttcgatgagagcgagaaa
cccaacgccaagccgatccgcaaggtgccgagtctgggcggaacgaagccgaccaaaaag
cgctga
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