Pseudomonas sp. MT-1: MT1_3243
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Entry
MT1_3243 CDS
T10396
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psmt Pseudomonas sp. MT-1
Pathway
psmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MT1_3243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmt03019
]
MT1_3243
03009 Ribosome biogenesis [BR:
psmt03009
]
MT1_3243
Enzymes [BR:
psmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MT1_3243
Messenger RNA biogenesis [BR:
psmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MT1_3243
Ribosome biogenesis [BR:
psmt03009
]
Prokaryotic type
rRNA processing factors
MT1_3243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAP80418
LinkDB
All DBs
Position
3593385..3596534
Genome browser
AA seq
1049 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAD
RHGFLPLKEISREYFKKSPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWSAVKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQ
QVMPQYASKIKLYEDPVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREA
LEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRSRARIFILPDDHLETPHFEVQ
RLRDDSPEIIAGQASYEMSPTEVEEVQPVSSTRTLVRQEAAVKTAPQRTAPAPAPIAAPA
ELPAPATQEPSLFKGLVKSLVGLFAGKQETPAAEVEKKPAASSRPQRNDERRSGRQQNRR
RDSRSNRDEERKPREERAPREDRQPREERQPRPPREERKPREAREPRESREPVEASENTA
QPQQQQQQQQQPRRERTPREDRQPREERKRELRAPLDDNAQTAPVAANGEESSERKPRPP
REERKPRVEQAESAEEQQSETAEIAQEEQDSPEGSDRPRRRSRGQRRRSNRRDRQRDANG
NEIDDETQSTNAEVSESNAPVKSEQVAIAATAAALAANTADADTAPAEIQIETREAEASA
PAVAVNQTDEADKPANVPATQDSEAVTPVIAEAEPAPAVQKASEPEASATETETSQSVAT
PAFEEQAQTATETEAPIVTASGRAPNDPREVRRRRLEQERLAKEAAEAEAKEKATTETQA
PAELASPEIVVSEPATDATNQQPASTANGNAEPSIARKPETPPAEPEAEQAVTELLQLQP
EVEAVKPATEADADVQEEVDPQGLDKRQD
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcccgaagagttgcgtgtcgcactggtcgatggccagcgc
ctgttcgaccttgacatcgaatccggtgctcgtgaacagaagaaagccaacatctacaag
ggcaagatcactcgcgtcgagcccagccttgaagccgccttcgttgatttcggtgccgat
cgccacgggttcctccccctcaaggaaatttcccgcgagtacttcaagaagtcgccggaa
ggccgcgtcaacatcaaagaagtcctgagcgaaggccaggaagtcatcgttcaggtcgaa
aaagaagagcgcggcaataaaggcgctgcccttaccaccttcatcagcctcgccggtcgc
tatctcgtattgatgccgaacaacccgcgcgcgggcggcatttctcgtcgcattgaaggc
gaagaacgcaacgaactgcgcgaagcactcaacggtcttgatgtccctgccgatatgggc
ttgatcgtccgtactgccggtctcggccgttcaagtgaagaaatgcaatgggacctcgat
tacctgttgcagctatggagcgcagtcaaggaagcctctcaggatcgcgccgcccccttc
ctgatctatcaggaatccaacgtcatcattcgcgccattcgcgactacctgcgccaggac
atcggcgaagttctgatcgacagcgtcgaagcccaggacgaagcgctttcctttattcag
caggtcatgccgcagtacgcaagcaagatcaagctgtacgaagatcctgtaccactgttc
aaccgtttccagatcgaaagccagatcgagacggccttccagcgcgaagtgaagctgcca
tccggcggctccatcgttatcgacccgactgaagcattggtgtccatcgacatcaactcg
gcgcgcgccaccaagggcggcgacatcgaagaaactgccctgcagaccaacctggaagcg
gctgaggaaatcgcccgccagctgcgcttgcgcgacattggcggcctgatcgtcatcgac
ttcatcgacatgacgccggccaagaatcagcgcgccgttgaagagaaggttcgtgaagca
ctggaagccgaccgcgcacgaatccaagtcggccgcatctcgcgcttcggcctactggaa
atgtcccgccaacgccttcgtccatcgctcggcgagaccagcggtatcgtctgcccgcgc
tgtaatggtcaaggcatcattcgcgatgtcgaatcattgtcgctggccatcttgcgtctg
atcgaagaagaagcccttaaggatcgtaccgccgaggtccgcgcccgcgttcccttccag
gttgccgccttccttctcaatgagaagcgcaacgcgatcaccaagattgaactgcgcagc
cgcgcgcgcatcttcatcctgccggacgaccatctagagacgccgcacttcgaagtgcag
cgtctgcgcgacgatagcccggaaattatcgccggtcaggccagctatgaaatgagccca
accgaggttgaggaagttcagccggtcagctcgacgcgcacactggttcgtcaggaagcg
gccgtcaaaaccgcgccacagcgtaccgcgcccgcgccggccccgatcgctgcgcccgct
gagctgcctgcacccgcgactcaggagccaagcctgttcaaggggttggtcaagtccctg
gtcggcctcttcgccggcaagcaggaaacgccagccgctgaagtcgagaagaaacccgcc
gctagcagccgcccacaacgcaacgatgaacgccgtagtggtcgccagcagaaccgtcgc
cgtgattcgcgcagcaaccgcgacgaagagcgcaagcctcgtgaagaacgagcccctcgt
gaagaccgccagcctcgcgaagagcgtcagccgcgcccgccacgcgaagagcgcaagcca
cgggaagctcgcgaaccgcgtgagtctcgtgagccagtcgaagccagcgaaaacactgca
cagccgcaacagcaacagcaacagcaacagcaaccacgtcgtgaacgcactccgcgcgaa
gatcgtcagccgcgagaagagcgcaagcgcgaattgcgcgcaccgctcgatgataacgct
cagaccgcaccagtcgcggcgaacggcgaagaaagctctgagcgcaagccgcgtccgccc
cgcgaagagcgtaaacctcgcgtagaacaagccgagagcgcagaggaacagcagagcgaa
accgcggagatcgctcaggaggagcaggattcgccagaaggtagcgatcgcccacgccgc
cgctctcgtggccagcgtcgccgcagcaaccgtcgtgatcgtcaacgcgacgccaatgga
aacgagatcgacgacgagacccagagcaccaacgccgaggtaagcgaaagcaatgcaccg
gtgaaatctgaacaggtcgccattgccgcaactgccgccgctctcgcggcgaacaccgca
gacgccgacaccgcacccgctgagattcaaatcgaaacaagggaagcggaagcctcagct
ccagccgtggccgttaatcaaacggacgaagctgacaagccggccaatgttcccgcaact
caggatagcgaagccgtgacaccggttatcgcagaagcggagccagctccggcggtgcag
aaagccagcgagcccgaagcgtcagcaacggagaccgagacttcgcagtctgtggccact
cctgctttcgaggagcaggcccagaccgcgaccgagactgaagcgccgatcgtgacggct
agcggtcgtgcacctaacgacccacgtgaggtccgccgccgccgcttggagcaagagcgt
cttgctaaagaagcagccgaggccgaagcgaaagagaaagcgacaaccgaaacccaagct
ccggcagaactggccagccctgaaatcgttgtcagcgaaccggccaccgacgcgacaaat
cagcagccagccagcacggcgaatggcaatgcagagccaagcatcgccaggaagccggaa
acgccacctgccgaaccagaagccgaacaggccgtgaccgagctgctccagctccagccc
gaagtggaggcggtcaagcccgccactgaagctgacgcggatgtgcaggaggaagtcgat
ccgcagggcctcgacaagcgccaagactga
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