Pseudomonas sp. MT-1: MT1_3269
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Entry
MT1_3269 CDS
T10396
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psmt Pseudomonas sp. MT-1
Pathway
psmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MT1_3269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmt03400
]
MT1_3269
Enzymes [BR:
psmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MT1_3269
DNA repair and recombination proteins [BR:
psmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MT1_3269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAP80444
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All DBs
Position
3619941..3623387
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPPMPAASGKQTWGNLPGAALSLAIAEAASNADRFTLLLTADSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPELTHGVLVVPITTALHKLAPK
RFLLGSSLVLDVGQKLDVEQMRVRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKESVTGFRARFRERFDVDFR
RCPVYQDLSTGITPAGIEYYLPLFFDETSTLFDYLPGDTQVFSLPGIEQAAEHFWKDVRT
RYEERRVDPERPLLPPAELFMAVEDCFAHLKLWPRIVASQDDVETGIGRERFPASRFPEL
AIDAKAPEPLGALRRFLDEFPGRVLFTAESAGRREVLLELLARLKLRPQEVAGWPQFVES
SERLAIAIAPLDDGLLLQDPALALIAESPLFGQRIMQRRRREKGRDAGENVIKNLTELRE
GAPVVHIDHGVGRYHGLVTLEIEGQAAEFLMLQYAEEAKLYVPVSSLHLIARYTGSDDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGHAFEDPQLDYETFSAGFPF
EETPDQMAAIEAVRNDMLAPRPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTT
LLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEIQAAVQELAEGKVDILIGTHKLLQDDVK
FTNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATP
PARRLSVRTFVMEQQNSVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIG
VGHGQMRERELEQVMGDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRKAMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKSIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPD
VHARLILYKRIANAADESGLRELQVEMIDRFGLLPEPAKHLVRLTLLKLQAASLGITKID
AGPQGGRIEFAADTSVDPMVLIKLIQSQPNRYKFEGATMFKFQVPMERAEERFNTLEALL
ERLSAEKP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtattgcgccttccgcccatgcctgccgccagcggcaagcaaacctggggcaac
cttcctggtgccgcgctgagcctggccattgccgaagcagccagcaacgcagatcgattc
actctccttcttaccgccgacagccagagcgccgaacgcctgcaggaagagctcgccttc
tttgcgcctgacctgccggttttgcacttccccgactgggagacgctgccctatgacgtg
ttttcgccgcatcaggacatcatctcccagcggattgcagcgctctatcagctgccggag
ctgacgcacggcgttctggtagtccccatcaccacagcgctacacaaactggctccgaag
cgattcttgctcggatccagcctggtgctggatgtcggccagaagctcgatgtcgagcag
atgcgggtgcgcctcgaagcagccggctatcgctgcgtcgatacagtctacgaacatggc
gagttcgcagtccgtggcgcgctgatcgacctgttcccgatgggcagccccctgccctac
cgcatcgacctgttcgatgacgaaatcgaaacgctgcgcaccttcgatccagaaaatcag
cgttccatagataaggtcgagtcgatccgattgctgccggcacgcgagttcccgctgaag
aaggagtcggtcaccggcttccgcgcacgcttccgtgagcgctttgatgtggatttccgc
cgctgcccggtttaccaggatctatccaccgggatcacgccggccggtatcgagtactac
ctgccgctgttcttcgacgagacctcgacgctgttcgattatctgccgggagacacccag
gtgttctcgctgccgggtatcgaacaggctgcagaacacttctggaaagacgtccgtact
cgctacgaagagcgtcgcgtcgaccctgagcgcccattgctaccaccggccgaactgttc
atggcggtcgaagactgctttgcgcatctaaaactttggccgcggatcgtggccagccag
gacgatgtagaaaccggcatcggccgcgagcgctttccagccagccgcttccctgagctt
gcgatcgacgccaaggcacctgaacccttgggtgcattgcgccgctttctcgacgaattt
ccaggccgcgtattgttcaccgccgaatcggccggccgtcgcgaggttctgctcgagctg
ctcgctcggctgaagctgcgcccgcaggaagttgctggctggccgcagttcgttgagagc
agcgagcgtctggcgattgccatcgccccgctcgacgacggcttgctgctgcaagacccg
gctttggcgctgatcgccgaaagcccactgttcggccagcgcatcatgcagcgccgccga
cgtgaaaaaggtcgtgatgccggcgagaacgtcatcaagaacctcaccgaactgcgcgaa
ggcgcgccggtggttcacatcgaccacggtgtcggccgctatcacggcctggtcaccttg
gagatcgaaggtcaggccgccgagttcctgatgctgcagtacgccgaagaggccaagctc
tacgtaccggtctccagcctgcatctgattgctcgttacaccggcagcgacgatgcactg
gcgccgctgcaccgcctgggatcggaaacctggcagaaggccaagcgcaaagcggccgag
caggtccgggatgtcgccgctgagttgctcgacatctatgcccgccgcgcggcacgtgaa
ggccatgcgttcgaagacccgcagctcgactacgagacgttcagcgctggcttcccgttc
gaggagaccccagatcagatggccgctattgaagcggttcgcaacgacatgctcgcgccc
cgccctatggaccgcctgatctgcggcgatgtgggcttcggcaagaccgaagtggccatg
cgcgcggcgttcatcgcggtgcacagtggccgtcaggtggcggtgctggtgccaaccaca
ctgcttgcccagcagcactacaacagcttccgcgaccgtttcgccgactggccggttcgc
gttgaggtgatgagccgcttcaaatccgcaaaagaaatccaggctgctgtgcaggagctg
gccgaaggcaaggtcgacattctcatcggtacgcacaagctgctgcaggacgacgtcaag
ttcaccaatctcggcttggtcatcatcgacgaagaacaccgcttcggggtgcgccagaag
gaacagctcaaggcgctgcgcagcgaggtcgacatcctcaccctgaccgccacaccgatt
cctcggactttgaacatggccgtcgccggcatgcgagacctctccatcatcgccacgccg
cctgcgcgccggctgtcggtgcgcaccttcgtcatggagcagcagaactctgtgatcaag
gaagcgctgctgcgtgagctgttgcgtggtggccaggtctattacctgcacaacgacgtg
aagacgatcgagaaatgcgccgctgatcttgccgaactggtgccggaagcgcgcattggc
gtaggccacggccagatgcgcgaacgcgaactcgaacaggtgatgggcgacttctaccac
aagcgttttaacgtgttgatcgcctcgaccattatcgagacgggcatcgacgtaccgagc
gccaacaccatcatcatcgaacgtgccgacaagttcggcctggcccagctgcatcagctg
cggggacgcgtcggacgcagccaccaccaggcctacgcctatctgctgacgccaccacgc
aaggccatgacccctgacgctgaaaagcgcctggaagccatcgccaacgcacaggatctc
ggagcaggcttcgtcctcgccacccacgatctggagattcgcggcgcgggcgagctgctc
ggcgatggccagagcggacagattcaggcggtcggtttcacgctctatatggagatgctc
gagcgtgcggtcaaatccatccagaaaggtgaacagccgaacctcgatcaaccgctgggc
ggcgggccggagatcaatctgcgcgtcccggcgttgattccggaagactacctgccagat
gtgcatgcgcggttgatcctctacaaacgcatcgccaacgccgccgacgagagcggtctg
cgtgaactgcaggtcgagatgatcgatcgcttcggtctgctgcctgaacctgccaaacat
ctggtcaggctgaccctgcttaagctgcaggccgccagcctcggaatcaccaaaatcgac
gccgggcctcaaggggggcgcatcgagttcgctgcggatacaagcgtcgacccgatggtg
ctgatcaaactgatccagagccaacccaaccgttacaagttcgaaggcgccacgatgttc
aagtttcaggtgccgatggagcgtgccgaagagcgcttcaacacgcttgaggcattgctc
gaacgtttgtccgcggaaaagccgtaa
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