Pseudomonas sp. MT-1: MT1_3686
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Entry
MT1_3686 CDS
T10396
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psmt Pseudomonas sp. MT-1
Pathway
psmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MT1_3686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmt03019
]
MT1_3686
03016 Transfer RNA biogenesis [BR:
psmt03016
]
MT1_3686
Enzymes [BR:
psmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MT1_3686
Messenger RNA biogenesis [BR:
psmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MT1_3686
Transfer RNA biogenesis [BR:
psmt03016
]
Prokaryotic type
tRNA degradation factors
MT1_3686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
KH_N4BP1_2nd
S1_2
ANAPC1
Motif
Other DBs
NCBI-ProteinID:
BAP80861
LinkDB
All DBs
Position
complement(4055739..4057844)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVAVTGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVVST
SKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPTYEQLKASSLDMVV
AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVVQAVTELAAEAGKPTWDWQPKAEN
TQLLNAIRSEFGEAISQAYTITIKQDRYARLGELKDQVVAKFSGEEGQPTAGEVKEAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRSVAAMLPSAD
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQ
VIGQSRTELSANAPTMIAMKIDQDKIRDVIGKGGATIRSICEETKASIDIEDDGSIKIFG
ETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDQRV
EKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaatttcaattcggtcaatcgaccgtaaccctcgagactggc
cgtatcgcccgtcaagccagcggcgccgtactggtcaccgttgatgacgacgtgaccgtg
ctggttgccgtcactggcgctaaaactgcagacccgagcaagggctttttcccgctctcg
gttcactatcaggaaaagacctacgcagccggcaagattccaggcggtttcttcaagcgt
gaagcgcgtccttccgaaaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgt
cctctgtttccggaaggcttccagaatgaagtccaggtgatctgcaccgtcgtatcgacg
agcaagaagaccgatccggacatcgctgcgatgatcggtacttccgccgcgctggcgatt
tccggcattccgttcaacggcccgatcggcgctgctcgcgtcgccttccacccggaaacc
ggctacctgctgaacccgacttacgaacagctcaaggcctcgagcctggacatggtcgtt
gccggtaccaaagatgccgtactgatggtcgagtcggaagccaaagagctaaccgaagac
cagatgctgggcgcggtactcttcgctcacgacgagttccaggccgtagtgcaggccgtt
accgagttggcagccgaagcgggcaagccgacctgggattggcagccaaaggctgaaaat
acccagctgctcaatgccattcgcagcgaattcggcgaggcgatctcgcaggcatacacc
atcaccatcaagcaggaccgctacgcgcgtctgggtgagctgaaagatcaggtcgttgcc
aagttctccggtgaagaaggccagccgacagctggcgaagtcaaagaagccttcggcgaa
atcgagtaccgcaccgttcgcgagaacatcgtcaacggtaagccgcgcatcgatggtcgc
gacacccgcactgttcgtggtctgaacattgaggtcggtgtactcgacaagacccacggc
tcggcgctgttcacccgtggtgaaacccaggcgctggtcgttgccaccctcggcactgcc
cgtgatgcgcagctgctcgacaccctggaaggcgagaagaaagatcccttcatgctgcac
tacaacttcccgccttactcggtgggcgagtgtggccgcatgggcgctaccggtcgccgc
gaaatcggtcacggccgtctggctcgccgttcggttgctgcaatgctgccgagcgctgac
gaatttccctacaccattcgcgtggtgtcggaaatcaccgagtcgaacggctccagctcc
atggcttcggtctgcggtgcttcgctcgcgctgatggatgccggcgtgccgatgaaggcg
ccggtagccggtattgccatgggtctggtcaaggaaggcgataagttcgccgttctgacc
gacatcctcggcgacgaagaccacctgggcgacatggacttcaaggtggctggtaccgcc
aagggcgtcaccgcgctgcaaatggacatcaagatccagggcatcaccgaagagatcatg
gagatcgcgctgggtcaggcgcttgaagcacgtctgaacattctcggccagatgaatcag
gtcatcggtcagtcgcgtacagagctgtcggccaacgcgccgaccatgatcgccatgaag
atcgatcaggacaagatccgtgacgtgatcggcaagggtggcgcgaccatccgcagcatc
tgtgaagaaaccaaggcctcgatcgatatcgaagatgacggttcgatcaagatcttcggc
gaaaccaaggaagctgccgaagctgcgaagcagcgcgttcttggcatcaccgctgaggca
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctcccaggcaaggatggtctggtgcatatctcgatgctgagcgatcagcgcgtc
gagaaggttaccgacgtgctcaaggaaggccaggaagtgaaggtcctggtgttggacgtc
gacaaccgcggccgtatcaaactgtcgatcaaggatgtggctgctgccgaagcatcaggc
gcataa
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