Pseudomonas sp. MT-1: MT1_3980
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Entry
MT1_3980 CDS
T10396
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
psmt Pseudomonas sp. MT-1
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmt03400
]
MT1_3980
DNA repair and recombination proteins [BR:
psmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MT1_3980
Archaeal homologous recombinant proteins
MT1_3980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
AAA_18
AAA_15
nSTAND3
ABC_tran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAP81154
LinkDB
All DBs
Position
4332265..4335921
Genome browser
AA seq
1218 aa
AA seq
DB search
MKILAIRLKNLASLAGEQVIDFTAEPLARAGLFAITGPTGAGKSTILDALCLALFGNTPR
LEDVGTQGKVPDGSDEIGNTDERNLLRRGCASGYAEVDFIGVDSHRYRARWEVKRAREKV
DGRLQASSQSLLDLDRDQLLASGKKREFKELLEARLGMNLAQFTRAVLLAQSEFSAFLKA
DDNDRGTLLEKLTDTGLYSRLGQAAFEAAKRARETLTALQQQAGGVQPLEPEARQALEAQ
HQTQLAELKALQQQLETLKQQSQWLQDLARLQGDHETARQQLSDAESEHENLADARRILG
LFELLAPQRHRFIREQALAPLLAKVEENLARHGREHSAVQQRLDELEHLCKTSTDALKAA
EQALKSAEPRLVQARREEERLSHLTNDLGDARRQTEHAEAASKAGEQTLAQLRQQQERAA
TQLAALTEGLARSTELQPLCAAWNGYRPRLQQAVQIAARLQQGRQELPALETAAKTAEAA
QVQARQALDELQTGIGGATGLADQLAQLNTQLDVWRDAQREGETLLGIWSRQQQLANQQQ
ALLDEQSRQQHELNALTQAGKLARSERDDAEKALKVVQALLDRQRLARSANVEALRAALS
PGEPCSVCGSLEHPWHDGKALLAALDQGDEREVEQAQLQLKSHDEKLQALRDQHIALTTG
MKQNAQRHAEIADELAKLEPQLTALPLYAELLQEPETERHSWLDTKLATLKTQITTANVR
QRELLALQQRSETLQHAWQSARDACGQASQALTGQRDAIARDEERLDEELAEFASLLPAA
LLSRWREAPAETFMQLDSQVEARRQQIDQQTEVAEEQQQRQSALEREQLQQQNRLDQQKA
CAARLSDLEARELACRQSLRDSLGEQTSAAAWQQQLENTIQTTRQHQADIDRQLNEARVE
LTRLASEQQNCAGRRDELLAERKTLGDELDAWRAAHPDLDDATLTQLLQLDDALLAEARE
RLRANTELLARSRERLDGCTQWLAAHQAGRPDAPDGETLKRQYAEQEINCNAAEQRSAET
RAALLDDDRRRNQSQALLQQIAEATSESQRWGRIAALIGSSDGGAFRKIAQAYNLDLLVQ
HANVQLRQLARRYRLKRGGSPLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSKLKIESLFIDEGFGSLDPESLQIAMDALDSLQAQGRKVAVISHVAEMHERIPVQIQV
QRQGNGQSGLRIVSGAGI
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctcgccattcgcctgaaaaacctcgcctcgctggccggcgagcaggtcatc
gacttcaccgccgaacccctggccagagctggcctgttcgccatcactgggcctacaggt
gccggcaagagcacgattctcgatgcgctgtgtctggcgctgttcggcaatacgccgcgc
ttggaagacgtaggcacccaaggcaaggttccggacggcagcgatgagataggcaataca
gacgaacgcaacctgcttcgccgcggttgcgccagtggctatgccgaagtggatttcatt
ggcgtcgacagccaccgctaccgcgcccgctgggaggtcaagcgcgcccgcgaaaaggtc
gatggccgcttgcaggccagcagccaaagcctgctcgacctggaccgcgaccagctcctg
gccagcggcaagaaacgtgaattcaaggagctgctggaagccaggctcggcatgaacctg
gcgcagttcacccgtgccgtgctgctggcccagagcgagttttcggcgttcctcaaggcc
gacgacaacgaccgcggcaccctgctggaaaagctcaccgacaccggcctctacagccgc
ctcggccaagcggccttcgaagcggccaagcgcgctcgcgaaacgctgacagccttgcaa
caacaggccggcggcgtacagccgctcgaacccgaagcgcgccaggcgctggaagcccag
caccagacgcaactggccgaactcaaggcgctgcaacaacagctcgaaacgctgaaacag
caaagccaatggctgcaggacctggcccgcttacaaggcgatcacgaaaccgcccggcag
cagctgagcgatgctgaatccgagcatgagaacctggccgacgcccgccgcatcctcggg
ctgttcgagctcctggcgccgcaacggcatcgcttcatccgtgagcaggcgctggcaccg
ctgctggcgaaggttgaagagaacctggctcgccatggtcgcgagcacagcgcagtccag
cagcggctcgacgagctggagcatctctgcaagacgtcgaccgatgcgttgaaagcagcg
gagcaggcgctcaaatctgccgaaccccgactggttcaggcgcgccgcgaagaagagcgc
cttagccatctgaccaatgacctgggtgacgcgcggcggcaaaccgaacacgccgaagcc
gcgagcaaggccggcgaacagaccctcgctcagctgcgacagcaacaggaacgggccgcc
acccaactggcggccttgaccgaagggctcgcccgcagcaccgaattgcagccgctgtgc
gccgcctggaatggctaccgtcctcgcctgcagcaggccgtgcagatcgcggcgcgcctg
caacagggccgtcaggagctccccgctctggaaactgctgccaagaccgccgaggctgca
caggtgcaggcacgccaggcgctcgacgaactgcaaactgggattggcggcgcaacgggc
ctggccgaccagctggcgcaactgaacacgcagctagacgtttggcgcgacgcccagcgc
gaaggcgaaaccctgctcgggatctggtcccgccagcagcaactggcaaatcagcagcag
gcattgctcgacgagcaaagccgccagcagcacgaactcaacgccctgacgcaggccggc
aaactcgctcgcagcgagcgggacgacgcggaaaaagcgctcaaggtggtgcaagccctg
ctggatcgccagcgcctggcccgcagcgccaatgtcgaggctttgcgcgcggccctttcc
cccggcgagccgtgcagcgtctgcggcagcctcgagcatccctggcatgacggcaaggcg
ttgctcgctgccctcgaccagggcgacgagcgcgaagtcgagcaggcccagctgcagctc
aaaagtcacgacgaaaaactccaggcgctgcgcgaccagcacatcgccctgaccaccggc
atgaaacagaacgcgcagcggcacgcggaaatcgccgatgagctggcaaagctggagccg
caactgaccgcactgcccctttatgccgagctgctgcaagagccggaaacagaacgccac
tcctggctggatacgaaactcgccacgctcaaaacccagatcaccacggccaacgtccgc
cagcgcgaactgctggcgctgcagcagcgcagcgaaaccctgcagcacgcttggcaaagt
gcacgcgacgcctgcggtcaggcgagccaggccctcaccggccagcgcgacgccatcgcc
cgcgatgaggaacgattggacgaggagctggccgaattcgccagcctgttaccggccgcc
ctgctcagccgttggcgcgaggcacccgccgaaaccttcatgcagctcgacagccaggtc
gaggcccggcgccagcagatcgaccaacaaacagaggtcgctgaggagcagcaacagcgc
cagagcgcactggaacgtgagcagcttcagcaacagaatcgtctcgatcagcaaaaggcc
tgcgccgcccgcctcagtgacctcgaagcccgagagttggcctgtcgtcagagcctgcgc
gacagcctgggcgagcaaaccagcgctgcggcctggcagcagcaactggagaacacgatc
cagactactcgccagcaccaggccgacatcgaccggcaactcaacgaagcgcgcgtcgag
ctgacccggcttgccagcgagcagcagaactgcgccgggcgccgcgacgaactgctggcc
gaacgcaaaacgctaggcgacgagcttgacgcctggcgcgctgcgcatcccgatctagac
gatgcgaccctcacgcagttgctgcaactggacgacgctttgctcgctgaagcccgcgaa
cgtctgcgcgccaacaccgaactgctcgcccgcagccgtgaacggctggacggctgcacg
cagtggctggccgcgcatcaggccgggcggcccgatgcgccggatggcgaaaccctgaaa
cgccagtacgcggaacaggaaatcaactgcaacgcagccgagcaacgcagcgccgaaacc
cgcgcggcgctgctcgacgatgaccgccggcgcaatcagagccaggcactgcttcaacag
atcgccgaggccaccagcgaaagccagcgctggggccgtatcgccgcgctgatcggctcc
agcgatggcggcgccttccgcaagatcgcccaggcctacaacctcgacctcttggtgcag
cacgccaatgtgcagctgcgacagttggctcgtcgttatcgactcaagcgcggcggcagc
ccgctggggttactggtgatggatacggagatgggcgacgagctgcgctcggtgcattcg
ctgtcgggtggagagaccttcctcgtctcgctggccttggcactgggactggcctcgatg
gcgtcgagcaagctcaagatcgagtcgctgttcatcgacgaaggcttcggcagcctcgac
ccggaatccctgcagatcgccatggacgccttggattcgctacaggctcagggccgcaaa
gtggcggtgatctcacacgtggcggagatgcatgagcgcatcccggtgcagattcaggtg
cagcgacagggcaatggtcagagcgggttgaggatcgtcagcggagcgggcatctag
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integrated database retrieval system
