Pseudomonas sp. ML2-2023-6: V6L79_01560
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Entry
V6L79_01560 CDS
T10713
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L79_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmz03019
]
V6L79_01560
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_01560
Enzymes [BR:
psmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6L79_01560
Messenger RNA biogenesis [BR:
psmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L79_01560
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6L79_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
S-methyl_trans
AAA_22
PorA
Motif
Other DBs
NCBI-ProteinID:
WWT66691
LinkDB
All DBs
Position
complement(371672..373609)
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AA seq
645 aa
AA seq
DB search
MHNTLEQVFGYPQFRAGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSRDDASAVMARAKTGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPNVIADM
QAKFAIAEADVITTGFYRANLNLWVEPVSGATKRERLVQWMGQRIGQPSIVYVTLQRTAE
QIAQHLNQHGISANAYHAGLPHDQREGIQRQFMSGQLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSECLVLANRDSLNVLENFVYGDTPELQGIRCVLDELR
GAIPEGQWEFMLLPLSDQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLIEPEVL
LARFEGERQQFVSAIIQTSSRARTWATVNFDALYSQHQADRNRVVKALDYFQEKGWIELE
SKQMTEVYSLLVSDFDAQALSQELHAYFTAHERGEIVRIHAMLALFASETCLSYRLAQYF
GDEQAPQHCGHCSVCAGQVAHLPEPPALSPLVDKNFEALCGAFIHRHQEYTGSYPLAERL
TRFLCGISVPMFTKMKARAIAGFAALENYPYAQVREWAAKEMLSL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggagcaggttttcggttacccacagtttcgtgccgggcaagaagcg
gcgatcagtgctgttctggctgggcgttcggcggcggcgatttttccgacgggttcgggc
aagtcgttgtgttaccaactgccggccctgttattgccgcacctgacactggtggtctcg
cccctgttagccctgatgcaagatcagttggcgtttttgcaacgccacgggattgcggcg
gccagcattgattcggcgcaaagccgtgatgacgcaagtgcagtcatggctcgggcgaaa
acgggtgagttgaagattttgatgatctcggttgagcgcctcaagaacgaacgttttcgt
aacttcttgcagcaggtgccgatttcattgctggtggtggatgaagcgcactgtatttcc
gagtgggggcacaattttcgcccggactacctgaagctcccggactaccagcgtcagttc
aatatcccgcaggccttgctgcttacggctacagctacgcccaatgtaatcgcggatatg
caggccaaattcgcgattgccgaggcggatgtcattaccaccggtttctatcgcgccaac
ctcaacttatgggttgagccggtcagcggcgcgaccaagcgcgagcgcctggtgcagtgg
atgggccagcgcattggccagcccagcatcgtgtacgtcacgctgcaaaggaccgctgag
cagattgctcagcacctcaaccagcacgggatcagtgccaacgcctatcacgccggtttg
ccccacgatcaacgtgagggcattcagcgccagtttatgagcgggcagttgaattgcatt
gtcgccaccattgcctttgggatgggcattgataaaagcgacatccgcaacgtggtgcat
tttgacttgcccaagtcgattgaaaactacagccaggaaatcggccgcgccgggcgtgat
ggtcagccgtccgaatgtctggtgctggccaaccgcgacagcctcaacgtgctggaaaac
tttgtgtacggcgatacgcccgagctgcaaggcattcgctgcgtgcttgatgaactgcgt
ggggcgatacctgaagggcagtgggagttcatgcttctgccgttgtctgatcagagcaat
attcgtcagttaccgctcaaaaccttgttggtgcaactggagctgcgtggtctgattgct
ccgcgctatgcctattttgcggagtatcgcttcaagtttttgatcgagcccgaagtactg
ctggccaggttcgagggcgagcgccagcagttcgtctcggccatcatccagacttccagc
cgtgccagaacctgggccacggtgaatttcgacgcgttgtacagccagcatcaggccgac
cgcaatcgggtggtcaaggcgctggattactttcaggagaagggctggatcgagcttgaa
agcaagcagatgactgaggtctacagcctgttggtgagcgattttgatgcccaggcgctg
agccaggagttgcatgcttacttcactgcccacgagcgtggcgagattgtgcgtattcac
gcgatgctggcgttgttcgccagtgaaacttgcctgagctatcggctggcgcagtacttt
ggcgacgaacaggcaccgcagcattgcgggcattgttcggtgtgcgcagggcaggtagct
cacttgccggagccgcctgcactgtcgccgcttgtggataagaacttcgaagcgttatgt
ggcgcttttatccacaggcatcaggaatacacgggaagttatcccctggcagaacgcctg
acccgttttttatgcgggatcagtgtgccgatgttcaccaagatgaaagcgcgcgccatt
gcggggtttgcggcattggaaaactacccctatgcccaggtgcgggaatgggccgcgaag
gaaatgctttccttgtag
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