Pseudomonas sp. ML2-2023-6: V6L79_04685
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Entry
V6L79_04685 CDS
T10713
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L79_04685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmz03019
]
V6L79_04685
Enzymes [BR:
psmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6L79_04685
Messenger RNA biogenesis [BR:
psmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L79_04685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WWT67269
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All DBs
Position
1019530..1021383
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AA seq
617 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
EKLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACVFGGVGTN
PQVQALARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFRLPATHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGAV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLMGFDSSTVEAEKPEVRERPDVRNPRNPPRGPRGDGPGNPGGGG
GRKDKGKEKSKEKPAAARSERPAREQKPREAQPAREQRQPTPRSDANRAPDEFRDDDVDN
FGNRADYVSPYQNKNNQSRGRRPGAPATGTGTGAAPAARTGGRQNAPRTGSGASTGTPPA
KRSGPRSGAPRDGQARRENRPARDDARQEPAVKGPRENQPKIMHKESKSDRFPTPEQLDQ
LPNRPRGEKPALLTRNR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccattgaagctgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgctcttccgattctg
gaaaagctgtttcccaatggccacccggacaaatcccagcgccacggcccacgccaacca
cgcgtgctggtcctgaccccaacccgcgaacttgccgcccaggtgcacgagagcttcaag
ctctacgcccgcgacttgaagttcgtcagcgcctgcgtgtttggcggtgtcggcaccaac
cctcaggtccaggctctggcccgtggtgttgacgtactggttgcctgcccgggtcgtttg
ctcgacctggctggtcaaggcagcgttgacttgtcccacgttgaaatcctggtgctcgac
gaagctgaccggatgctcgacatgggcttcgtccatgacgtgaaaaaagtcctcgcacgt
ctgccgtccaagcgtcaaaacctgctgttttcggcgacgttctccaaggacatcactgat
ctggccggcaagttgctgcgcaacccggaacgcatcgaagttacgccgcccaacacgacg
gtcgagcgtatcgaacagcgtgttttccgtttgcctgccacccacaagcgtgcgctgctg
gctcacttgatcaccgcaggcgcctgggaacaggttctggtctttactcgtaccaagcat
ggcgccaaccgcctggctgagtacctggacaagcatggccttagcgccgtagccatccac
ggtaacaagagccagaacgcgcggaccaaagccctggccgactttaaagccggtgccgta
cgcattctggtagcgaccgatattgccgctcgcggtctggatatcgatcagctgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgttcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggcgatctcgctggttgctccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgacccgccagaaaatcgccgatggcgacctgatgggtttt
gactccagcaccgtagaagctgaaaagcctgaagtgcgcgagcgtccggatgtgcgtaac
ccgcgcaacccgccacgtggtcctcgtggcgacggtccgggtaacccgggcggtggcggc
ggtcgtaaagacaaaggcaaggaaaagagcaaagagaagccagccgctgctcgtagcgag
cgtcctgctcgtgagcaaaagccgcgcgaggctcaacctgcccgtgaacagcgtcagcca
accccacgttcggacgccaaccgtgcgccggacgagttccgcgatgacgatgtagacaac
tttggtaaccgcgctgattacgtcagcccgtaccagaacaaaaacaaccagagccgtggc
cgccgtccgggtgctcctgcaacgggtactggcactggcgcagcgccagcagcacgtact
ggtggtcgtcaaaatgctccgcgtaccggcagcggcgccagcactggcacaccgcctgcc
aaacgcagcggtccacgcagcggtgccccgcgtgacggtcaagcccgtcgcgaaaatcgc
ccggcccgtgacgatgcccgtcaagagccagcggttaaaggcccgcgtgaaaatcagccg
aagatcatgcacaaggagtcgaaaagcgatcgtttcccgacacctgagcagctcgatcaa
ctgccgaaccgccctcgtggtgaaaagcctgcgctgttgactcgcaaccgctga
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