Pseudomonas sp. ML2-2023-6: V6L79_04945
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Entry
V6L79_04945 CDS
T10713
Symbol
dgcB
Name
(GenBank) dimethylglycine demethylation protein DgcB
KO
K21834
N,N-dimethylglycine/sarcosine dehydrogenase ferredoxin subunit
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz00260
Glycine, serine and threonine metabolism
psmz01100
Metabolic pathways
Module
psmz_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
V6L79_04945 (dgcB)
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Gene cluster
GFIT
Motif
Pfam:
DUF3483
CCG
Fer4_10
Fer4_8
Fer4_9
Fer4_17
Fer4_6
Fer4_2
Fer4_16
Fer4
Fer4_4
Fer4_7
Fer4_21
Fer4_22
Motif
Other DBs
NCBI-ProteinID:
WWT67319
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Position
1079415..1081358
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AA seq
647 aa
AA seq
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MLNIVLPILLFAALALAVLGAARRMNMWRRGRPAKVDWLGGLLAMPKRYMVDLHHVVARD
KYMANTHVATAGGFVLAAVLAILVHGLGLHNRILGYALLFATALMFVGALFVFKRRLNPP
SRLSKGPWMRLPKSLLAFSVSFFILTLPVAGLLPEGFGGWVLAAVLAVGVLWGVSELFFG
MTWGGPMKHAFAGALHLAWHRRAERFGGGRSTGLKPLDLDDRTAPLGVEKPKDFTWNQLL
GFDACVQCGKCEAACPAFAAGQPLNPKKLIQDMVVGLAGGTDAHFAGSPYPGKPIGEHGG
NPHQPIVNGLVDADTLWSCTTCRACVEECPMMIEHVDAIVDMRRFLTLEKGATPNNGAQV
LDNLIATDNPGGFAPGGRMNWAADLNLDLMRDKPSADVLFWVGDGAFDMRNQRTLRAFVK
VLKAARVNFAVLGLEERDSGDVARRLGDEATFQVLAKRNIQTLGQYQFQRIVTCDPHSFH
VLKNEYGAFGGDYLVQHHSTYMAELISAGLLNLAADAGGSVTYHDPCYLGRYNGEYEAPR
AVLRALGIEVKEMQRSGFRSRCCGGGGGAPITDIPGKQRIPDMRMDDIRETGAERVAVGC
PQCTAMLEGVVEPRPLIKDIAELVADALIEGPALAQPAKRVAPEVIA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatatcgttctccccattttgttattcgccgcactggccctggccgttttgggc
gccgcgcggcgcatgaacatgtggcgccgtggccgtccggcgaaggtcgattggttgggc
ggcctgctggccatgcccaagcgttacatggtcgatctgcaccacgtggtcgctcgcgac
aaatacatggccaacacccacgtcgccaccgccggtggctttgtgctggcggcggtgttg
gcgattctggtgcacggtctggggctgcataaccgcatcctgggttatgccttgctgttc
gccacggcgctgatgtttgtcggcgcgctctttgtatttaaacgtcgccttaacccgccg
tcgcgcttgtccaaaggcccgtggatgcgcctgccgaaaagcctgctggcgttctctgtg
agtttttttatcctcaccttgccggtggccggtttgttgcccgaaggctttggcggctgg
gtgctggcggcggtgttggcggttggtgtgctgtggggtgtgtcggagctgtttttcggc
atgacctggggcgggccaatgaaacacgccttcgccggagccctgcatctggcctggcac
cgccgggccgagcgcttcggcggtggccgctccacaggtttgaaaccactggacctggac
gaccgtaccgcgcccctgggcgtggaaaaacccaaggacttcacctggaaccaattgctc
gggtttgacgcctgcgtgcaatgcggcaagtgcgaagccgcgtgcccggcgtttgccgcc
gggcagccgctcaaccccaagaagctgattcaagacatggtggtcggtttggcgggcggc
accgatgcgcacttcgcgggcagcccgtatccgggcaaaccgataggtgaacacggcggc
aatccgcaccagcccatcgtcaacggtctggtcgatgcggatacgctgtggtcctgcacc
acctgccgtgcttgcgtcgaagagtgtccgatgatgatcgagcacgtggatgcaatcgta
gatatgcgccgctttctgaccctggaaaaaggcgcgaccccgaacaacggcgcccaggtg
ctggacaacctgattgccaccgataaccccggcggttttgcaccgggcgggcggatgaac
tgggcagcggatttgaatctcgacctgatgcgcgataagccctcggcggatgtgctgttc
tgggtcggtgacggcgctttcgacatgcgcaaccaacgcaccttgcgtgccttcgtcaaa
gtgctcaaggcggcgcgggtcaacttcgcggtgctggggctggaagagcgcgacagcggc
gacgtggcccggcgcttgggtgatgaagcgacctttcaggttctggccaagcgcaatatc
cagacgctggggcaataccagttccagcgcatcgtcacctgcgacccccacagttttcat
gtgctgaaaaatgagtacggcgcctttggcggtgactacctggtacagcaccacagcacc
tacatggccgagttgatcagcgccggtttgctcaacctggccgcggatgcagggggcagc
gtgacctatcacgacccgtgttatctgggccgctataacggtgaatatgaggcgccgcgc
gcggtgctgcgagcgctgggcattgaagtcaaggagatgcagcgctcgggctttcgctcc
cgttgctgcggtggcggtggcggtgcgccgattaccgacattcccggtaagcagcgtatc
cctgatatgcgcatggacgatatccgtgaaaccggcgccgagcgcgtggcggttggctgc
ccgcaatgcaccgccatgctcgaaggcgtggtggagccacggccactgatcaaggacatt
gccgagctggtggcggacgccttgattgaaggtccagcactcgcccaaccggccaagcgc
gtagccccggaggtgatcgcatga
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