Pseudomonas sp. ML2-2023-6: V6L79_04985
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Entry
V6L79_04985 CDS
T10713
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz00260
Glycine, serine and threonine metabolism
psmz00460
Cyanoamino acid metabolism
psmz00630
Glyoxylate and dicarboxylate metabolism
psmz00670
One carbon pool by folate
psmz00680
Methane metabolism
psmz01100
Metabolic pathways
psmz01110
Biosynthesis of secondary metabolites
psmz01120
Microbial metabolism in diverse environments
psmz01200
Carbon metabolism
psmz01230
Biosynthesis of amino acids
psmz01240
Biosynthesis of cofactors
psmz04981
Folate transport and metabolism
Module
psmz_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
V6L79_04985 (glyA)
09102 Energy metabolism
00680 Methane metabolism
V6L79_04985 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
V6L79_04985 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
V6L79_04985 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
V6L79_04985 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
V6L79_04985 (glyA)
Enzymes [BR:
psmz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
V6L79_04985 (glyA)
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Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
WWT67327
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Position
1088881..1090134
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AA seq
417 aa
AA seq
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MFSKQDQIQGYDDALLAAMNAEDQRQEDHIELIASENYTSQRVMEAQGSGLTNKYAEGYP
GKRYYGGCEHVDKVEQLAIDRAKQLFGADYANVQPHSGSQANAAVYLALLNAGDTVLGMS
LAHGGHLTHGASVSFSGKLYNAVQYGIDTATGLIDYDEVERLAVEHQPKMIIAGFSAYSK
FLDFPRFRQIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLI
LAKANEALEKKFNSAVFPGGQGGPLMHVIAAKAVCFKEALEPGFKAYQQQVIDNAQAMAE
VFIKRGFDVVSGGTDNHLFLLSLIRQGLTGKDADAALGRAHITVNKNAVPNDPQSPFVTS
GLRIGTPAVTTRGFKVAQCTQLAGWICDILDHLGDADIEADVARQVTSLCKDFPVYR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaagcaggatcagatccagggttacgacgatgccttgttagcggccatgaat
gccgaagatcagcgccaggaagatcacatcgagttgatcgcctccgagaactacaccagc
cagcgcgttatggaagcccaaggcagcggtctgaccaacaagtacgccgaaggctatccg
ggcaagcgctactacggcggctgcgagcacgtggataaagtcgagcaactggccatcgac
cgcgccaagcaactgttcggcgccgattacgccaacgtgcagccgcactccggcagccag
gccaacgcggcggtgtatctggcgctgctgaatgccggtgacaccgtactgggcatgagc
ctggctcacggtgggcacttgacccacggcgccagcgtcagcttctccggcaagttgtac
aacgccgtgcagtacggtatcgacaccgctaccggtctgatcgactacgacgaagtggaa
cgcctggccgttgagcatcagccaaagatgatcattgccgggttctcggcttattccaaa
ttcctcgatttcccgcgctttcgtcagatcgctgacaaggtgggcgcctacctgtttgtc
gacatggcccacgttgccggtctggtggctgcggggctgtacccgaacccgctgccgtac
gccgatgtggtcaccaccaccactcacaaaaccctgcgcgggccacggggcgggctgatc
ctggccaaggccaacgaagcgctggagaaaaagttcaactcggcggtgttccctggtggt
cagggcggtccgttgatgcatgtgatcgcggccaaggcagtgtgctttaaagaggcgctg
gaacccggcttcaaggcgtatcaacagcaggttatcgacaacgctcaagccatggctgaa
gtgtttatcaaacgtgggttcgacgtggtctcgggcggtaccgacaaccatctgttcctg
ctcagcctgatccgtcagggcctgaccggcaaagacgccgatgctgcactgggccgcgcc
catatcacggtcaataaaaatgccgtgcccaacgatccgcaatcgcccttcgtgacctcg
ggcctgcgcattggcaccccggcggtgaccactcgcggtttcaaagtggcgcaatgcacg
cagttggcgggctggatctgcgacatcctcgatcacctcggcgatgccgatatcgaggcc
gacgtggcgcgccaggtgacctcgctgtgcaaagacttcccggtttatcgctga
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