Pseudomonas sp. ML2-2023-6: V6L79_05215
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Entry
V6L79_05215 CDS
T10713
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6L79_05215 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmz03021
]
V6L79_05215 (rpoD)
Transcription machinery [BR:
psmz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6L79_05215 (rpoD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
WWT67370
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Position
complement(1143889..1145736)
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDPKVKAEGDDEEDDKEEAAEEEEEVESGPDPIIAAQRFGAVSDQMELARKALKKH
GRGSKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMP
RTDFLRLFPGNEVDESWSDALAKGKSKYAEAIGRLQPDIIRCQQKLSALEAETGLKIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATRDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctcggccgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaagatatttcagatccg
gagcaagtggaagacatcatccgcatgattaatgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgatgccgacaccgacgaagcagcggctgaa
gaagcggctgcagcgttggcggcagtagagaccgacattggtcgtactaccgacccagtg
cgcatgtatatgcgtgaaatgggcacggtagaactgctgacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagaaggcatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccatattctctccgagtacactcgcgtcaccaccgaaggtggtcgcctg
tccgacgttctgagcggttatatcgacccggacgacggtattgcaccacccgcagccgaa
gtgccgcctcctgtcgatcccaaggtgaaagccgaaggtgatgacgaagaggacgataag
gaagaagctgccgaggaagaggaagaggtcgaaagcggccccgatccgatcatcgcggct
cagcgttttggcgctgtttccgatcagatggaactcgctcgcaaggcactgaaaaagcac
ggtcgtggcagcaagcaggcaattgccgagctggttgcactggctgagctgttcatgccg
atcaaactggtcccgaagcaattcgaaggcctggttgagcgtgttcgcagcgccttggag
cgtctgcgtgcacaagagcgcgccatcatgcagctgtgtgtacgtgatgcacgcatgccg
cgtaccgatttcctgcgcctgttcccgggcaacgaagtcgacgaaagctggagcgatgcg
ctggccaaaggcaaaagcaaatacgctgaagccattggtcgcctgcaaccggacatcatc
cgttgccagcaaaagctgtctgctctggaagccgagaccggcttgaagattgccgagatc
aaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagag
atggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgtggt
ttgcagttcctcgatctgatccaggaaggcaacatcggcttgatgaaagcggtagacaag
tttgaataccgccgcggctacaaattctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccgtcagatgttgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgttgctaccgttgag
agccttaaagaagcgacacgcgacgtactcggcggcctcacagcacgtgaagccaaagta
ctgcgcatgcgtttcggtatcgacatgaataccgaccacacccttgaggaggttggtaag
cagttcgacgttacccgtgagcgtattcgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgagaagcgagcatttgcgctccttcctcgacgagtga
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