Pseudomonas sp. ML2-2023-6: V6L79_05550
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Entry
V6L79_05550 CDS
T10713
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6L79_05550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmz03021
]
V6L79_05550 (rpoC)
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_05550 (rpoC)
Enzymes [BR:
psmz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6L79_05550 (rpoC)
Transcription machinery [BR:
psmz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6L79_05550 (rpoC)
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6L79_05550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
WWT67430
LinkDB
All DBs
Position
1213647..1217846
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFLGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRISETVNDRDGGSVSNTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKASIIAAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGAEIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLTENERLGGEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgtgagaagtgtggcgttgaagtcgcactggccaaggtccgtcgcgag
cgcatggctcacatcgagctggcttcgccagttgcacacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccactctggaaaaaggtcagctgctg
aacgatgagcagtatttcgaagcgctggaagagttcggcgacgatttcgatgcccgtatg
ggtgccgaagctgtccgtgagctgctgcacgctatcgacctggaacacgagattggccgt
ctgcgcgaagagattccgcaaaccaactccgaaaccaaaatcaagaaactgtccaagcgc
ttgaagttgatggaagccttcctgggttccggcaaccttcctgagtggatggttctgacc
gttctgccggttctgccgccggatctgcgtcctttggttccgttggatggtggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagcggtcgacgcactgctcgacaacggccgtcgtggtcgcgctattaccggttcgaac
aagcgccctctgaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagccgttc
atttttggcaagctggaaatgcgtggtctcgctaccaccatcaaagcggccaagaagatg
gttgagcgcgagctgccggaagtttgggacgttctcgctgaagttatccgcgaacacccg
gtcctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgttgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgctgacttgcaagaagttgaccgtgtattccgtgctggc
gaagccgcactgcatgccaaggttaaagttcgcatcagcgaaaccgtcaatgaccgtgat
ggcggcagcgtgagcaacacccgtatcgtcgacaccactgtcggtcgtgcgctgttgttc
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaagcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagccagcatcatcgcggctgctaccgatgaa
gtgaaagagatcgaaagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtaatcgacctttggtcgaaagctaacgacgaagtatccaaggcaatgatgtcgaac
ctctcgaaagagaaggttattgaccgtcacggcgttgaggttgagcaagagtcgttcaac
tcgatgtacatgatggccgactccggcgcgcggggttctgctgcgcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccagatggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtctggcggataccgccttgaaaactgctaactccggttacttgacgcgtcgtctg
gtagacgttgcgcaggatctggttgtgaccgaagtcgactgcgggaccgaacacggtctg
ctgatgactccgcacattgaaggcggcgacgttgttgagccgttgggtgagcgcgtactg
ggtcgagtaatcgcccgtgatgtgttcaagccgggtaccgatgacatcatcgttcctgct
ggcaccctggtagacgagaagtgggttgaattcatcgagctgaacagcatcgacgaagtt
atcgtgcgctcgcctatcagctgcgaaacacgcttcggtatctgcgccaagtgctacggt
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagctgtcggcgtaatcgctgct
cagtcgatcggtgagccgggtacacagctgacaatgcgtacgttccacatcggtggtgcg
gcaagccggacctctgctgctgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaagcacgttgaacgagtggatggttgcctggtagctgtatcgcgttccggt
gagctggccatcgctgatgacttcggtcgtgagcgtgagcgttacaagctgccgtacggc
gccgtgatttcggttaaagaaggtgacaaggttgacgctggctcgatcgtagccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtgcttgatgccaaagaccgtccagctgccggcaaggacatccgtccagccgtgaagatg
gtgggtgtagatggcaaggatctgctgctgccaggtaccgacgtaccagctcagtacttc
ctgcctgctaacgccttggttggtgtagcggatggtgcggaaatcgcgatcggtgatgtt
atcgctcgtattccacaagaaacttcgaaaactcgagacatcaccggtggtttgccacgg
gttgctgacttgttcgaagcacgtcgtccgaaagaagcctcgattttggctgaagtcagc
ggcaccatcgcgttcggtaaagaaaccaaaggcaagcgccgtctggttattaccccgaac
gacggtactgatccgtacgaagagctgattccaaagtggcgtcacctgaacgtcttcgaa
ggcgagcaagtgaaccgcggcgaagttatctccgacggtccaagcgatccgcacgatatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgttaacgagatccaggatgtt
taccgtctgcaaggcgtaaaaatcaacgataagcacatcgagaccattctgcgtcagatg
ctgcgtaaagttgagattgccgagtctggcgattccaccttcatcaagggcgaccagatg
gagttgacccatgtgttgaccgagaacgaacgtttgggtggcgaagataaattcgtatcc
aagttcactcgcgttctgctgggtattaccaaggcgtcgttgtcgactgaatcgttcatc
tccgcggcctctttccaagagaccacccgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgttgtcgtgggtcgtttgatcccggcaggt
accggtttggcataccacagcgagcgtaagcgccgccgtgaggctgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcgagcggtaactga
DBGET
integrated database retrieval system
