Pseudomonas sp. ML2-2023-6: V6L79_09560
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Entry
V6L79_09560 CDS
T10713
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L79_09560 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmz03019
]
V6L79_09560 (rne)
03009 Ribosome biogenesis [BR:
psmz03009
]
V6L79_09560 (rne)
Enzymes [BR:
psmz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V6L79_09560 (rne)
Messenger RNA biogenesis [BR:
psmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6L79_09560 (rne)
Ribosome biogenesis [BR:
psmz03009
]
Prokaryotic type
rRNA processing factors
V6L79_09560 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WWT68170
LinkDB
All DBs
Position
complement(2063519..2066719)
Genome browser
AA seq
1066 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPPRTSAPVPTEAA
AAPAPAAPAPVATISEPSLFKGLVKSLVSLFASKEEPVAPTVVEKPATPERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAAREPREERTPREETPVVAQAPREERAPRPPR
EERAPRAPREDRKPRGEGREERVRELREPLDAAPAVAAATAVVAEERAPRPPREERQPRA
PREERAPREEQVVAAVEDEEVLSSEEQSQDENQDNAEGDRPRRRSRGQRRRSNRRERQRD
ANGNVIEGSEENSEEGNAQDAPATTLEIAAGLAVTEAVASSVISAPAEAQAHQQAERATE
ATQESAPAETAVAVEAAQEVIAVEAPAAQAPVAEATVVEAPVVEAVTPIDVIKAPEVEVA
PVQEAQPEVQVVAEPVVAAPEPVIEAVVQTPVVEAPAIEAPVAEKAPEPVKEARFVREPV
AEPAVVEAAPEPVVAVEPAVVAVEAVVETAVTAQPAPVEAVVATEVVEVVVAAAPVVSAP
SNGRAPNDPREVRRRKREEAAAAAAAAQAPASEAVAQEEHESKPLA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaatgcaactcaacctgaagagttgcgcgtagcactggtagatggccaacgc
ctctacgacctggacatcgagtcgggtgcacgcgagcagaagaaagccaacatctacaaa
ggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgacttcggctctgag
cgccacggctttctgccactcaaggaaatctcccgcgagtacttcaagaaagcccctgaa
ggccgcgtaaacatcaaggacgtcctgagcgaaggccaggaagttatcgtgcaggtcgag
aaagaagagcgtggcaacaagggcgcagccctgaccaccttcatcagcctcgctggccgt
tatctggttctgatgcctaacaacccacgtgctggcggtatctcccgtcgcatcgaaggt
gaagagcgtaacgaactgcgtgaagcgctgaacggcctgatcgcccctgccgacatgggc
ttgatcgtacgtactgcaggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaattgtggaccgccattaaagaagcctcgctggatcgctccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgtgattacctgcgccaggac
atcggtgaagtactgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaaaatcaaactctacgaagacagcgttccgctgttc
aatcgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgttgaactgcct
tccggcggctccatcgttatcgacccgaccgaagccctggtgtctatcgacatcaactcg
gcccgcgccaccaaaggcagcgatatcgaagaaaccgcactgcagaccaaccttgaagcg
gctgaagaaatcgcccgtcaattgcgcctgcgcgacatcggcggcttgatcgtcatcgac
ttcatcgacatgacccctgccaaaaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagcagaccgtgcccgcgtacaagtgggtcgtatctcgcgcttcggcctgctggaa
atgtcccgtcaacgcctgcgtccatccctgggtgaaagcagcggcatcgtttgcccacgc
tgcaacggcactggcatcatccgtgatgttgagtcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaggaccgtactgccgaagtacgtgcccaggtgccaatcccg
gttgccgcattcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgcgctcgcatcgtcattctgccgaacgaccacctcgaaacgccgcacttcgaagttcag
cgcctgcgtgatgacagcccggaagcccacaccaaccagtccagctatgaaatagctgcc
gctgctgctgaagtggaagaagtccagccggctgctgccacccggactctggttcgccag
gaagccgcggtcaaaacagcaccgccgcgcacctcggccccggtacctaccgaagccgct
gctgcacctgctcctgcagcacctgcacccgttgcaaccatctccgagccaagcctgttc
aaaggtctggtcaagtcgctggtaagcctgttcgcctccaaggaagagcctgttgctccg
accgtagtcgagaagcctgcaacccctgagcgccctgctcgcaacgaagagcgtcgcaac
ggccgccagcaaagccgcaaccgcaacggtcgccgtgatgaagaacgcaaaccgcgcgaa
gagcgtgcaccacgtgaagaacgtgctgctcgtgaaccacgtgaagagcgcacacctcgc
gaagaaaccccggttgttgctcaagcacctcgcgaagaacgcgctccgcgtccaccgcgt
gaagagcgtgctccacgtgcaccgcgcgaagaccgcaaacctcgtggcgaaggccgtgaa
gaacgcgtccgcgaactgcgcgaacctctggatgccgcgcctgccgtagctgctgccact
gcagtagtcgctgaagagcgcgcaccgcgcccaccgcgtgaagaacgtcagccgcgcgca
cctcgcgaagagcgtgctccacgcgaagagcaggttgtagccgctgttgaagacgaagaa
gtgctgtccagcgaagagcaatcccaggacgagaaccaggacaacgccgaaggcgatcgt
ccacgtcgccgctcccgtggtcagcgtcgtcgcagcaaccgtcgtgaacgtcagcgtgat
gccaacggcaacgtgattgaaggctcggaagagaacagcgaagaaggcaacgcccaggac
gctcctgcaaccacccttgaaatcgccgccggtctggccgtgactgaagctgttgccagc
tcggtaatcagcgctcctgctgaagcccaggctcatcagcaagcagagcgcgctactgaa
gcaacccaggaatcggccccggctgaaaccgcagttgccgtagaagctgcacaggaagtc
atcgctgtcgaagcgcctgctgctcaagcgccagttgctgaagccaccgttgttgaagca
ccggttgtagaagctgtcactccgatcgacgtgatcaaggcacctgaagttgaagtggct
ccggttcaagaagcacagcctgaagtccaggtcgttgccgagccggttgttgctgctcca
gagcctgtcatcgaagccgtggtgcaaaccccggtcgttgaagcaccggctatcgaagcg
ccagtcgccgaaaaggcaccggaacctgtcaaggaagcccgctttgtacgcgagccagtt
gcagaacccgccgttgttgaagccgcacctgaacccgttgttgcagttgaacctgcagtg
gtagcggttgaagctgtagtcgaaactgcagtcaccgcacagccagctccggttgaagct
gttgtggcaacagaagtggttgaggttgtagtggcagccgctccggttgtcagcgcccca
agcaatggccgcgcacctaacgacccgcgtgaagtacgtcgccgcaagcgtgaagaggct
gccgcagccgctgccgctgctcaggcacctgcaagcgaagccgtagcccaggaagaacac
gagtccaaacccctcgcgtaa
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