Pseudomonas sp. ML2-2023-6: V6L79_09945
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Entry
V6L79_09945 CDS
T10713
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6L79_09945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmz03019
]
V6L79_09945
03009 Ribosome biogenesis [BR:
psmz03009
]
V6L79_09945
Enzymes [BR:
psmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6L79_09945
Messenger RNA biogenesis [BR:
psmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6L79_09945
Ribosome biogenesis [BR:
psmz03009
]
Prokaryotic type
rRNA helicases
V6L79_09945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
WWT68244
LinkDB
All DBs
Position
2137216..2138889
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQHQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLTPLVADAESTHGDLLDRLIADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNSAPRERSSERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEVGLESLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagct
gtcatcgcgactggctacgaagaaccttcggctattcagcatcaatcgatcccgatcatt
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgccgatcctgcaccgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgcctggtgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtactgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaaactgggtttcatggacgatcttgaagttatcttcaaggctctgcctccaacc
cgtcagaccgtattgttctcggcaaccttgccgcagtcgatccgtgccattgctgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagttgaagatttcgacgccctgatcatgttcgtacgcaccaagcaagcgaccctggat
ctggccagcgcccttgaagccaaaggctataaagctgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtaatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggtcttgatgttccacgtatcactcacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtactggccgtgcaggt
cgcgaaggtcgcgcactgctgctggtaactcctcgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgctgaagtccgcctgccggatgcccaagctgttctc
gatgctcgcatcaagaagttgaccaacagcctgacacctctggtagctgacgctgaatcg
actcacggtgatctgctggatcgcctgattgccgatatcggttgcagcccgcgtgctctg
gctgctgctctgctgcgcaaagcaaccaatggtcaggctctgactctggctgcgatcgaa
cgcgaccgtccactggtgcctaacagcgcaccgcgtgagcgttcgtccgagcgtactggc
gaccgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggctcgtgaagctatcggtcgcatccaggtgcgtgac
agcttcagcctggtagaactgccggaagtaggtctggaaagtttgctggccaaactgaaa
gacacccgcgttgctggcaagcagctgaagctgcgtcgctaccgcgaagattaa
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