Pseudomonas sp. ML2-2023-6: V6L79_16185
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Entry
V6L79_16185 CDS
T10713
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03420
Nucleotide excision repair
psmz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6L79_16185
03430 Mismatch repair
V6L79_16185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_16185
Enzymes [BR:
psmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6L79_16185
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6L79_16185
MMR (mismatch excision repair)
Other MMR factors
V6L79_16185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
T2SSE
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WWT64843
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Position
3540953..3542824
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AA seq
623 aa
AA seq
DB search
MSRQPEATMDDVPDADQIIQDCLNLDHPKSFFLYAGAGSGKTHSLVEAVKILKNRERQRL
TFEGRQIAIITYTKAASEEITRRLEHDPLVVVSTIHAFSWRMIQGFNDDIREWLRVKLTQ
DIGELNEKLGKARGQNKTFLANQASRDSKARRLDSLDEISTFIYSPTGDNRGRQALNHSE
VIQMAAAFIQLPPLLNIMADLHPVLLIDESQDTYGPLMDAFLRAQSLIPDRFCLGLLGDT
MQRIYNDGKVRLEEAIPPDWAVPEKRMNRRCPTRVVDLINVIRAGADNHQQKPKPDAIEG
TVRMFCTQQTPGQSFGLEEDIAQRMAAITGDTQWAAGKDGRKTLILEHKMAGRRMGFEGV
FTPLYGVEHLRTGLLDGTLPILKLFFERVAPILQATKMNDFSLMEAVRLQSPLLDPKSMK
EVPDQLALLEKAGDATESLCELFNDNDPLIGDVAQVLLQTGLLDLPDRLVAALSLGATTD
APPDTSDRDALETHAYQTLLGRPFSEMAAFAGYTDGLSPFDTHQGVKGLEFPRVMVILND
EEAGGFLFSYDKLLGVKPASDSDVKNQHEGKDDSLARTRRLLYVTCSRAEESLAIVVYTA
QPGIAKQRVIEAGWLKPDEVDLL
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagccggcagccggaagctactatggatgatgttccagatgccgatcagatcattcag
gactgtctgaatctcgaccatccgaagagttttttcctatacgccggcgctggctctgga
aaaacccattcgttagtcgaagccgtgaaaattctaaagaatagggaacggcaacgactg
acttttgaaggacgccaaatcgcgatcatcacctataccaaagcggcgtccgaggaaatt
acccgccgtcttgaacacgacccactggtggttgtgtcaaccattcacgccttctcttgg
cggatgattcagggcttcaatgatgacattcgtgagtggcttcgggtcaagctcacccaa
gacattggtgagctcaatgagaagcttggaaaggctcgagggcaaaacaagacatttcta
gcaaatcaagcttcaagggatagcaaagctcgtcgcctcgattccctggatgagatatcc
acattcatttacagccctaccggcgacaatcgcggtaggcaagccctaaaccatagtgaa
gtcattcaaatggcagctgcttttatccagttgcctccattgctgaatattatggcggat
ttgcaccctgtactcttgatcgatgagagccaggatacctatgggcctctcatggatgct
tttctgcgagcacaatccctcatccctgaccgtttctgtctcgggcttctcggcgatacc
atgcaacgcatctacaacgatgggaaggtgcgcttggaggaagcgatccctccagattgg
gcggtgcccgaaaaacgtatgaaccgtcgctgcccaacaagggttgttgatcttatcaat
gtaatccgtgcgggcgcagacaatcatcagcagaagccaaagccggacgccatagaaggc
acggttcgaatgttttgcacccaacagacaccaggtcaaagcttcgggttggaggaagac
atagcacagcgcatggcagccatcaccggcgatactcagtgggcagctggtaaggatgga
agaaagaccctcatccttgaacacaagatggccggacgtcgaatggggttcgagggtgtg
ttcacacctttgtatggggttgagcacctacgaaccgggctgttggacggaacactgcca
atcttgaaactgtttttcgaacgggtggcccctattcttcaagctaccaaaatgaacgat
ttcagtctcatggaagctgtgcggcttcagtcgccgcttctcgaccctaaatccatgaaa
gaggtgcctgaccagttagccttgcttgagaaagcaggagacgctactgaatcgctgtgt
gaactattcaatgacaacgaccccctgataggagacgtcgctcaagtcctactccaaaca
ggcctgctggatctcccagaccgacttgtagcagctctatcgctgggcgctacgactgat
gcccctccagacacatcggatcgtgatgcattagaaacccatgcataccagactctacta
gggcgtcccttctcggaaatggctgcgttcgctggttataccgatgggctttcccccttc
gacacgcaccagggtgtaaaggggctggagttccccagagtcatggtcatcctcaatgac
gaagaggcaggtggtttccttttcagttacgacaagctcttgggtgtcaaaccagcttct
gacagcgacgtaaaaaatcaacacgagggcaaagatgattccttggctcgcactcgtcgc
ctgctgtatgtcacgtgcagccgggccgaagaaagtctcgcgattgtggtttacaccgct
cagcctgggatagctaagcagcgagtaatcgaggcaggatggctcaagcccgacgaggtc
gatcttctgtga
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