Pseudomonas sp. ML2-2023-6: V6L79_20980
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Entry
V6L79_20980 CDS
T10713
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
V6L79_20980 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_20980 (sbcB)
Enzymes [BR:
psmz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
V6L79_20980 (sbcB)
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
V6L79_20980 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V6L79_20980 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6L79_20980 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WWT65714
LinkDB
All DBs
Position
complement(4506785..4508236)
Genome browser
AA seq
483 aa
AA seq
DB search
MTSIFWYDYETTGINPRCDRAVQVAGIRTDLELNEIDQPVNLYCQPSDDILPHPMACLIT
GITPGRLEDKGLGEAEFMTRTHAQLALPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGIVWPEDDGRVTLKLERLTAANGIDHGQAHDALSDVR
ATIALARLIRDKQPKLYDWLFQLRTKQRVLDQVRLLQPMVHISGRFSAARHYVGVVLPLA
WHPKNRNALIVCDLHFDPQPLLDMDAETLRQMLYTRREDLPEGQLPVPLKLIHVNRCPVV
APLNVVRAQDQQRLQLDMPLYQARALSLTDTQEVWRDKLSTIYAREDFVPSDDPEQQLYD
GFIGDRDRRLCEQVRASDPEQLAKDTWPFDDERLPELLFRYRARNFPHTLSAQELERWHV
FCQQRLVDPVMGAPMTLANFTQATDELSRSATPDQLKLLGEWQRYAQALSRRVGLSLPGD
SED
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
gtgacctctattttttggtacgactacgaaaccactggcatcaatccgcgctgcgatcga
gccgtgcaagtcgctggtattcgcactgaccttgaactcaacgagattgatcagccggtc
aatctctactgccagcccagcgacgatattctgccgcacccgatggcctgcctgatcacg
ggcatcacccctggccgactcgaagacaaaggcttgggcgaggcggagttcatgactcgc
actcatgctcagctggcgttgccgggcacctgcggtgcgggctacaactcgctgcgcttt
gatgacgaggtcacgcgctacagcctgtaccgaaatttcttcgacccttatgcgcgtgaa
tggcagggtggtaacagtcgctgggatttgattgatgtagtgcgcacggcctatgcccta
cgccctgaggggatcgtctggccagaggatgacgggcgtgtgacgctcaagttggagcgt
ttgacggcggccaacggaattgatcacggtcaggctcacgatgcgttgtccgatgtgcgg
gcaaccattgcgctggcgcggctgattcgcgacaaacaacccaagttgtatgactggtta
ttccagttgcggactaaacagcgggtgcttgatcaagttcgtctgttgcaaccgatggtg
catatttcaggccgtttttctgcagccagacattatgtcggcgtggtattaccgctggca
tggcatccaaagaatcgtaatgcgttgatcgtctgcgatctgcactttgatcctcagcca
ttactggacatggacgcagaaactttgcgccagatgctttatacgcgccgcgaagatttg
ccggaaggtcagttgccggttccgctcaagctgatacacgttaatcgttgtccggtggtg
gcacccttgaatgtagtgcgggcacaggatcaacagcgtttgcagttggacatgccactc
taccaagcgcgcgccctcagccttaccgatacccaggaagtttggcgagataagttgtcg
accatttatgcccgcgaagactttgttcccagtgacgatcccgagcagcaattgtatgac
ggttttatcggtgatcgagaccgtcggttgtgtgaacaagtccgggccagtgatccggag
caactggccaaagatacatggccttttgatgatgagcgtttacccgagttgttatttcgc
taccgggcgcgaaacttccctcataccttgagtgcacaagagctggaacgctggcatgtg
ttctgccaacaacggttggtggaccctgtcatgggtgcccccatgacgctggctaacttc
acccaggccacggatgagctgtcgcgtagcgctacgccagaccagctaaagctgctgggt
gagtggcagcgctatgcgcaggcgttgagccgtcgtgtcgggctgagcctgccaggtgat
agcgaggattaa
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