Pseudomonas sp. ML2-2023-6: V6L79_22645
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Entry
V6L79_22645 CDS
T10713
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psmz Pseudomonas sp. ML2-2023-6
Pathway
psmz03410
Base excision repair
psmz03430
Mismatch repair
psmz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
V6L79_22645 (recJ)
03430 Mismatch repair
V6L79_22645 (recJ)
03440 Homologous recombination
V6L79_22645 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmz03400
]
V6L79_22645 (recJ)
DNA repair and recombination proteins [BR:
psmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
V6L79_22645 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
V6L79_22645 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6L79_22645 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WWT66021
LinkDB
All DBs
Position
complement(4881824..4883533)
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AA seq
569 aa
AA seq
DB search
MRIEPRPLPQILPFLGEMPTLLTRLYAARGVQSQAELDKSLARLIPYQQLKGIDAAVDLL
VVALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALTRTPQLLITVDNGISSIEGVAAAKKAGLSVLVTDHHLPGNELPAADAIVNPNQPGCDF
PSKALAGVGVIFYVLIALRARLNSLGWYQNSKAPNIAELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVAKRDPSKITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLTDDANAAREMAAQLDEMNQDRKSIEQGMQREALAQLKDLTIDSMPFGLCLFDPEWHQG
VIGILASRLKEKYFRPTFAFADAGDGMLKGSGRSVPGFHIRDALSVVAAQHPDLISKYGG
HAMAAGLTLPEANFPLFCEAFDAEVRRQLREEDLTGRMLSDGSLAVEEFHLELARALRNA
GPWGQHFPEPLFHGVFQLVEQRIVGERHLKVVLKTECGSVKLDGIAFGIDRDVWPNPTIR
WVELAYKLDLNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaacctcgcccactgcctcaaatcctgccttttctgggcgaaatgccaacc
ctgctgacgcgtctttacgcggcacggggcgtgcagtctcaggctgaactggataaaagc
ctggcgcggctgatcccgtatcagcagctcaagggcatcgatgccgccgtggatttgctg
gtagtggcgctcgaacagcgtcagcgcatcttgatcgtcggcgattttgacgccgacggt
gccacggccagcaccgtcggtatgctcggtttgcggttgctgggggcggcccatgtcgat
tatttggtgccgaaccgcttcgaatacggctacggcctgaccccggaaatcgtcgaagtc
gcgctgacccgtactccgcagttgctgatcacggtcgacaacggcatctccagtatcgaa
ggtgtagccgcggcgaaaaaggccgggttaagcgtgctggtgaccgaccaccacttgccg
ggcaacgagttgccagcggctgacgccatcgtcaatcccaaccagcccggctgcgatttt
ccgagcaaggcgctggctggggtaggggtgatcttttatgtactgatcgctttgcgtgcg
cgcttgaacagcctgggctggtaccagaacagcaaggcgccgaatatcgccgaattgctg
gatctggtggcactgggcagcgtggccgacgtggtgccgctggatgccaataaccggatt
ttggtgcatcagggacttgagcgaatccgtgccgggcgtgctcgtccggggctcaaggcg
attttggaggtggccaagcgtgacccttcaaaaatcacctcgaccgatctgggctttatt
ctggggccacgtctgaacgccgccgggcgtctggacgacatgagcctgggcatcgaatgc
ttgctcaccgatgatgccaatgcggcgcgagaaatggccgcgcaactggacgagatgaat
caggaccgcaaatccattgagcaaggcatgcagcgtgaagctctggcccagctcaaggac
ctgaccatcgacagcatgccgtttggcttgtgcctgtttgaccctgagtggcaccaggga
gtgatcgggattctggcttcgcgtctcaaggagaagtacttccggccgaccttcgctttt
gccgatgcgggcgacggcatgctcaaaggctccggacgttcggtgcctgggtttcatatt
cgtgatgcgctcagcgtggtggccgcacaacacccggacttgatcagcaaatacggtggg
catgcgatggctgccggcttgaccttgcccgaggccaacttccctctgttttgcgaggca
tttgatgccgaagtccgacgtcaattgcgtgaagaagacctcacggggcgcatgttgtcc
gacggcagcctggcggttgaagagtttcatctggagctggcgcgggctctgcgcaatgct
ggcccgtgggggcagcacttccccgagccgttgtttcacggggtgttccagctggtagag
caacgcatcgttggcgagcggcatttgaaagttgtgctcaaaaccgaatgcggcagcgta
aagcttgacggcatcgctttcgggattgatcgcgacgtgtggccgaacccgaccattcgc
tgggtcgagctggcctacaaactcgacctcaacgagttccgcggcaatgaaactgtgcaa
ctgatgattgcccatatcgaaccgcgctaa
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