Pseudopedobacter saltans: Pedsa_0165
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Entry
Pedsa_0165 CDS
T01430
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03030
DNA replication
psn03430
Mismatch repair
psn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pedsa_0165
03430 Mismatch repair
Pedsa_0165
03440 Homologous recombination
Pedsa_0165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psn03032
]
Pedsa_0165
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_0165
Enzymes [BR:
psn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pedsa_0165
DNA replication proteins [BR:
psn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pedsa_0165
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pedsa_0165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
ADY50751
UniProt:
F0SDM4
LinkDB
All DBs
Position
complement(204702..209066)
Genome browser
AA seq
1454 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEHQDYLISPDGFDIPY
DAERIHGISTDLAREQGVPLLEILDKFNEALSKTKFVVGQNIGFDINIMGAEFHRYGVES
ALSKLPVLDTCTEITANLLQLPGGRGGRFKLPTLTELHEYLFNVPFAEAHNATADVEATT
RCFLELIKREVFTVEELQVDTTYFLKFQEYNAGIIQPLGLQHVNLKEASDAIRKRQSAQE
TSQSDGSTVAVDLTDVDFVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMM
GAFHFVNNVLNHNKSAQAKNTEAEEKGETPTEQIIKPILGCEFFVCDNHKDKTRKDNGYQ
IVLLAKNKNGYHNLAKMSSLAYTDGFYYVPRIDRAIVEKYKEDIIVLSGNLYGEIPNKIL
NVGEIQAEDALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYY
INKKDAHAHDILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIV
NIQEIVDKIEIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYP
EITQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLG
ITNLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGT
MAAKSSIRDTARVLDLPLFEADKIAKLIPNLKLNKIFNMDDQALRSVLRSEELEGVQQLK
ELASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFD
NSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRGETV
GIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDLDAC
EEYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQAGE
NGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMND
IKQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETIIENR
KSGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILMEKAI
KYGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGHPLD
DYKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGRGWAFFKLEGYDDG
YEFAIYRDDYLKHKHHLVPNNYLQIKGNVSYYNNADGSKKPRISFSEFTDLRDVLEKQST
SLDIRLNIEHISVELTKDLESIFTNYSGSKKLNFTILDMRERVLLNMKSRSQKINICNEL
LSKLDNLELDYKLN
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgatatttgataccgagacgacaggattaccaaaaagatgggatgcgccaatt
acagatgtagacaattggccgcgttgtattcaaatagcttggcagttacatgacgaaatg
ggtaatctgatagaacatcaggattacttgatttctccagatggttttgatattccatac
gacgcagaaagaattcatggtatttccaccgatttagcaagagaacaaggtgttccactt
ttagaaatcttagataaattcaacgaagccttaagtaaaactaaatttgttgttggtcaa
aacattggtttcgatatcaatatcatgggagcagaattccatagatatggagtcgaatcc
gctttatcaaaacttcctgttcttgatacctgtacagaaatcaccgccaacttattacag
ctacctggcggtagaggcggaagatttaaattacccacacttactgaattacatgaatat
ttattcaatgtcccatttgcagaagcacataatgctactgccgacgttgaagccactact
cgttgtttcttagagttaattaaaagagaagttttcacagtagaagaactccaggttgat
accacttactttttaaaattccaggaatataacgccggaatcattcaaccactgggttta
caacacgtaaatctgaaagaagcttctgacgcaatcagaaaaaggcaaagcgcacaggaa
acttcacaaagtgacggaagtacagttgctgtagatttaacagacgtcgattttgttcat
cttcacaaccatactcagttctccattttacaatcgacaacatctattgctgagttggta
aaagcagctgtaaaaaataaaatgcaggcagttgccattaccgatcatgcgaacatgatg
ggagctttccattttgttaacaacgttctaaatcataataaatcagcgcaggcaaaaaat
accgaagctgaagaaaaaggagaaactcctacagaacagattataaaaccaattctaggt
tgtgagtttttcgtttgcgataatcataaagacaaaactagaaaagataacggctatcaa
attgtattgcttgctaagaacaaaaatggctatcataatttagctaaaatgtcttcctta
gcttatactgacggcttctattacgtacctagaatagacagagccatagtagaaaagtac
aaagaagatattatagtactttctggtaacctttatggagaaatcccaaataagatatta
aatgttggtgaaattcaggcggaagacgctttaatttggtggaaaaacacttttaaagac
gatttttatatcgaggtaatgcgccacggacaagaagatgaaaatcgtgtaaaccaaacc
ttaatcaaattagccagaaagcatcaggtaaaactgattgccaccaataatacttactat
atcaataaaaaggacgcccatgcacacgatattttgctatgtgtaaaagatggcgagaag
ataaacactcccattggacgcggacgcggctttagattcggaatgccaaaccaggaatac
tatttcaagtctcaggacgagatgaagaaattgttccaggacttgcccgaagctatagtc
aatattcaggaaattgtagataaaatcgaaatattcaaacttcagcgtgatgttttgtta
cctaagtttgatattcctgaagaatttcaggttgcagaagatgaaatcgatggtggtaaa
agaggagaaaacaaatatcttcatcatcttacttatgaaggtgccaaacgccgttatccg
gaaattactcaagaaattcgcgagcgtttagattttgaattggcaactatagaacgcacc
ggatatccgggttatttccttattgtacaagactttatcaaagctgctcgtgatatggga
gtttccgtaggcccgggccgtggttcagctgccgggtctgctgtagcttattgccttggt
attactaacctggaccctatagcttacgatttacttttcgagcgtttcctgaacccagat
cgtgtgtccatgcccgatattgatatcgacttcgacgacgaaggtcgaggtgatgtaatg
aaatacgttattgacaaatacggagccaatcaggtggcgcaaattatcacttacggtacc
atggcagccaaatcgtctattcgtgataccgcccgcgtactggatttgccattattcgag
gcggataaaattgcaaagctgattcccaacttaaagttgaataagattttcaacatggac
gatcaggctttgcgtagcgttcttcgttccgaagaattggaaggcgtacagcaattaaaa
gaattagcttctggaagcgatttaagtgccgaaaccatccaacaggctaaagtattggaa
ggatctgttagaaacaccggaatacatgcctgtggagtaattattacaccagacgacatc
acgaatttcgttcctgtttccatagcaaaagattccgatttatatgttactcaattcgat
aactctgtagtagagagtgcgggattattaaaaatggactttttggggttaaaaacgtta
acccttattaaggatactgtaaaactggtgaaatatagaaccgggattgaacttgatcct
gataaattcccgatagacgacgtcaagacgtacgagttattccaaagaggtgaaaccgtt
ggtatattccagtacgagtctcccggaatgcaaaaatacatgaaggaactaaaacctaca
gtcttcggagatttaattgccatgaatgcattataccgtccggggccactggagtatata
ccttccttcgtcagaagaaaaaatggtgaagaacccatcacctacgatttggatgcctgc
gaagagtaccttaaagaaacatatggtatcacggtgtaccaggagcaggttatgcttctt
tctcaaaagctggccaactttactaaaggcgaggcagacgttttacgtaaagccatgggt
aagaagcaaaaagatgtattggataaaatgaaaccaaaattcatcaaacaagctggtgaa
aatggtcacgacgaaaaagtactagaaaaaatatggaaagactgggaagcttttgcaagt
tacgctttcaacaaatcccactctacctgctatgcctgggtagcttaccaaacggcttat
ttaaaagctcattatccggcggaatatatggcggcagtactttccaacaacatgaacgat
ataaaacaggtaaccttctttatggaagaatgtaagcgtatgggattggaagtattaagc
ccggatgttaacgagtctttttataaattcacagtaaacgataagtatgccatccgtttt
ggaatgggagcaattaaaggtgtaggtgccggagcggtagaaaccattattgaaaataga
aaatcaggacaatacaaatccattttcgatttggctaaacgtatagatttaagagcagca
aacaaaaaagctttcgagaatctgattttagccggaggtttcgactgttttgaaggtaca
cacagagcgcaatatttcttcgatgacggagatggctcaatcttaatggaaaaagccatt
aagtacggcgcaaaatataaagagaatgaaaactcttctcaagccagcttatttggtggt
ggaagtgctgttgaaataccagagcctacacttcctgcttgtgacgaatggggaacgatg
gagaaactcgcgaaagaaaaagatgtagtaggtatttacatttccggtcacccgctggat
gattataaatttgttttagaaaaatactgctctgccggaaatctgaatatttttaatgat
atcgataaaggcctcgattttcaatttaaagtaggaggaattgtgtcctccgtaagacat
atggttactaaagatggccgcggctgggctttctttaaattggaaggatatgatgatggc
tatgagtttgcgatctatcgtgatgattatttaaaacacaaacatcaccttgttcctaac
aactatttacagatcaaaggcaatgtatcttattacaacaatgctgatggttctaagaaa
ccccgaatctcattttctgaatttacagacctaagggatgtcctggaaaaacaatcgaca
agtctggatatccgattaaatatcgaacatatatcagtagaattgaccaaagatcttgaa
agtatatttactaactattctggaagtaaaaaactaaatttcacgatcctggatatgcgt
gaacgggtactccttaatatgaaaagcagatcgcaaaaaattaatatttgtaacgagtta
ttatctaaattagataatctggaattagattataaactcaattaa
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