Pseudopedobacter saltans: Pedsa_0182
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Entry
Pedsa_0182 CDS
T01430
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pedsa_0182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psn03019
]
Pedsa_0182
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pedsa_0182
Messenger RNA biogenesis [BR:
psn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pedsa_0182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Helicase_C_2
AAA_22
Cas3-like_C_2
Tn916-Xis
Motif
Other DBs
NCBI-ProteinID:
ADY50768
UniProt:
F0SDP1
LinkDB
All DBs
Position
226951..228177
Genome browser
AA seq
408 aa
AA seq
DB search
MKFNKYNISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLI
SMLERSKPHLDKPTIKAVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKK
LNKADVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRRQ
TMFFSATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKE
NQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIAT
DISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEEKAYLDAIQE
YIGKPIDVMEINKGAYEETIVFSQANPYDWKSLMNEARQDNNGKRKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttaataagtacaatatatcatcaggtattaaaagaagtttggaagaggcaggt
tttaaaaagccgacagatatacaattcaaatctattcctcagattctttccggtcaggat
atattggcgatagctcagacaggtacgggaaaaactgcagcttttgcaatccctttgatt
agtatgcttgagcgatcaaaacctcatttagataagccgaccataaaagccgtagtaatg
gtgccaacaagggaacttgccatacagatagagcaggtttttctaaacctgggaaaatat
acatctataattcctttagctgtgataggtggagttgagattgaaccacaactcaaaaag
ctaaataaagcggatgttttgattgctacgccaggcagaattatggatctagtttttaaa
ggccatctttaccttaaacaaatagattttttagttttggatgaagctgatagaatgttg
gagcaaggtttttacaatgatatcaagaaattaataacattgttacccaaaaggagacaa
actatgtttttctctgcaaccataaatgatacaattaaagatctagcctatgcattggta
aataagccggtgcgtatccaattgtctccaaaagatcctgtgtctaaaaatgtagatcac
gccgttgcatatgtagggatggatgataaaagatttttcctggaaagattaattaaggag
aatcaggggaagaaaattatagtatttgtaagaaccaagataagggcagagcgggttgct
aaagcgatggaaagagtaaacatccatacagaaactatccacggagacaaagatcaaaaa
aatagatttcaggttttagataattttagagatggaaaaaatcagattttaatagcaaca
gatataagtgctagaggacttgatgtaaagggtgtagattttgttgtaaactacgatttg
cctgaagttcctgaaaactacgttcacagaataggcagaacgggcagaggtacgagccgg
ggaagagcagtgtcgttttgcagcgaagaggagaaggcttatttagacgcaatacaggaa
tatataggtaaaccgatagatgtaatggaaatcaataagggagcgtatgaagaaactatt
gtgttttcccaagcaaatccatacgattggaaaagcctgatgaacgaagccagacaagat
aataatggaaaacgtaaaaagaaataa
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