Pseudopedobacter saltans: Pedsa_0232
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Entry
Pedsa_0232 CDS
T01430
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
psn
Pseudopedobacter saltans
Pathway
psn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pedsa_0232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_0232
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pedsa_0232
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pedsa_0232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
nSTAND1
AAA_16
AAA_29
DnaJ_CXXCXGXG
AAA_15
nSTAND3
ATPase
RsgA_GTPase
AAA_22
AAA_25
cobW
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADY50818
UniProt:
F0SEF3
LinkDB
All DBs
Position
284106..286901
Genome browser
AA seq
931 aa
AA seq
DB search
MIENKDSAKNILIKGAKVHNLKNIDVAIPKNELVVITGMSGSGKSSLAFDTLYAEGQRRY
VESLSSYARQFMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLLFS
RIGKTISPISGKEVRKDTVTDVVNYITDLPEETTVTVICPLHPQNNRTLKEELAILLQKG
FVRVMLKGAIRKVEDIIEDETVENKELQLSDELYIIIDRIVTNKEDETLSRIADSVQTAF
FEGKGDCYVDFEGERRHFSDRFELDGLKFEDPVPNFFSFNNPYGACPTCEGYGKVIGIDE
DLVIPDKSKSVYDGAIVPWRGEKMREWADKLIKNASKFDFPIHRPIADLTNEQRALLWTG
NRYFNGLSDFFKYLEEQTYKIQYRVMLSRYRGKTNCPDCKGTRLRKDATYVKIKDQSISD
LVLMPLDKLLAFFDDLELDEREQVISKRLLLEISNRIKFLNEVGLGYLTLNRLSNTLSGG
ESQRINLATSLGSSLVGSIYVLDEPSIGLHPKDTNRLIGVLKSLRDVGNTVLVVEHEEEM
MKSADHIIDIGPEAGSNGGNLVFEGSFKEILKDKNSLTGKYLNGDLKIDIPIRRRKALDF
VTIKGARENNLKNVTVQFPLGVLTAVTGVSGSGKTSLVKRVLYPALQKVLGNYSGEQTGA
YDGIEGAYDLLAQVELIDQNPIGRSSRSNPVTYVKAWDEIRALYASQSSAKAAGLKPAAF
SFNVEGGRCDICQGEGEVKIEMQFMADIYLPCEACNGKRFKQHVLDITYKEKTVSEVLDM
TIDEALEFFKDEQKILNKLQPLADVGLGYVKLGQSSNTLSGGEAQRIKLASFLIKGNNSN
KSLFIFDEPTTGLHFHDIKKLLKSFEALIEQGNSIIVIEHNMDVVKCADWVIDIGPEGGD
NGGHVVFEGTPEDLIKEEKSYTGEYLQDRFL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaaataaagattctgcaaagaatattctaataaaaggagcaaaagtacataat
ctcaaaaacatagatgtagctattccgaagaacgaattagtcgttattactggaatgtcg
ggttctggaaaatcgtctttggcatttgatactttatacgcagaagggcaaaggcgatat
gttgaaagtttgtcatcttatgccagacagtttatggggaggatgaataaacctgatgtt
gattatatcaaagggattgccccggcgatagcgattgagcagaaggttattacttccaat
ccacgttcgacagtgggcacttctacagaaatatatgactacctgaaattattattcagc
agaatagggaagacaatttctccgatatctggaaaggaagtgagaaaagatacggtaact
gatgttgtaaattatataacggatttacctgaagaaactacagtaactgttatttgtccg
ctgcatcctcaaaataacagaacgttgaaagaagaattggcaatcttacttcagaaaggt
tttgttagagtaatgctgaaaggcgcaattcgtaaagttgaagatattatagaagacgaa
actgtagaaaataaagagctacagctttctgacgaattatatattattatcgataggatt
gttaccaacaaggaagatgaaactttaagcagaatagcagattctgtacagacagctttt
tttgaaggtaagggtgactgttatgtggattttgaaggcgaaagacgacatttttctgat
cgttttgagctggatggtttaaagttcgaagatcctgtccccaatttttttagtttcaat
aatccatatggagcttgtccaacctgtgaaggctacggaaaagttattggaatagacgaa
gatttggttattccggataagtcaaagtcggtttatgacggtgctatagtaccatggcga
ggagaaaagatgagggaatgggcagataaactgataaaaaatgcttctaaatttgatttt
ccgatccatagacctattgctgatctgactaatgagcaacgagcacttttgtggaccgga
aaccgttattttaatggtttaagtgacttttttaaatatttagaagagcagacttataag
attcaatatcgtgtgatgctttcgagatacagaggaaaaacgaattgtccggattgtaaa
ggaacaagattgagaaaagatgcgacttatgttaaaatcaaagatcaatcgatctccgat
ttggtattaatgcctttagataagttactggccttttttgacgatttggagcttgacgaa
agagaacaagttatatctaagcggttgctgctcgagatttcaaatagaattaagttttta
aatgaagtagggttggggtacctgactttaaaccgtttgtcgaatactttgtccggtggc
gaatcgcaacggataaatctggcaacatctttagggagctctttagtaggctcaatttat
gtgctggacgaacctagcattggtctgcatccgaaagatactaacagactgataggtgta
ctgaaatctttaagagatgtaggaaacactgttttggtggttgaacatgaagaggagatg
atgaagtctgcggatcatattattgatattggtccggaagctggttcaaatggtggaaat
cttgttttcgaaggaagctttaaggaaatattgaaagacaaaaacagtcttaccggaaaa
tacctgaacggagatttaaagatagatattcctataagaagacgtaaagcattggatttt
gtaactattaagggagccagagaaaacaatcttaaaaatgtaactgtacaatttcctttg
ggagttttaacggccgtaacgggagtctcaggctccggaaagacatctttggttaaacgt
gtgctgtatccggctttacaaaaagttttaggtaattattctggtgaacaaaccggtgca
tatgacgggattgaaggtgcatatgatttattggcccaagtagaattgattgatcagaat
ccaataggccgatcctccagatcgaatcctgtaacttatgtgaaagcctgggatgaaata
agagcattgtacgcttcgcaatcttcagccaaagcagcaggattgaaaccagcagcattt
tcatttaatgttgaaggtgggagatgtgatatttgccagggtgaaggagaagttaaaatt
gagatgcagtttatggcagatatttatttgccatgtgaagcatgcaatggaaaacgcttt
aaacagcatgttttagatatcacttataaagagaaaactgtttctgaagttttagatatg
actatcgatgaagctttggagttttttaaggatgagcaaaaaatattaaataaattgcag
ccgcttgctgatgttgggctggggtatgttaaattaggacaatccagtaatacattgtct
ggaggtgaggcacagcgtataaaactggcttcttttcttattaaagggaataacagtaat
aaaagtctttttatttttgatgaaccgactaccggattgcatttccatgatatcaaaaaa
ctgttgaaatctttcgaagcgttgattgagcagggaaactccattatcgttatcgaacat
aatatggatgtggttaaatgtgccgattgggtcattgatattggacccgaaggtggagat
aatggaggtcatgttgtttttgaagggactccggaagatcttattaaagaagaaaagtct
tatacaggcgaatatttacaggacaggtttttataa
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