Pseudopedobacter saltans: Pedsa_0780
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Entry
Pedsa_0780 CDS
T01430
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psn
Pseudopedobacter saltans
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psn03032
]
Pedsa_0780
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_0780
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pedsa_0780
DNA replication proteins [BR:
psn03032
]
Prokaryotic type
DNA Topoisomerases
Pedsa_0780
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pedsa_0780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
FGase
Motif
Other DBs
NCBI-ProteinID:
ADY51353
UniProt:
F0S955
LinkDB
All DBs
Position
complement(964792..967335)
Genome browser
AA seq
847 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLRKDDGAIEVDNNFKQHYEIPADK
KQVVAELKKLAKSAETVWLASDEDREGEAIAWHLYESLGLKENQTKRIVFHEITKPAITK
AIENPRTIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVERER
EINLFNAESAYKIIAIFSTGKGKEIFKAELSQRYAEQKEAEKFLEDCKSALYKINDLDIR
PTKRTPAPPFTTSTLQQEAGRKLGFSVSRTMSIAQRLYETGKITYMRTDSVNLSETALNA
SEIEINSAYGSKYHHKRIFKTKSAGAQEAHEAIRPTHFEWHTIEGDASEKRLYELIWKRA
IASQMSEAQFEKTTARIGISTRKEELVANGEVLKFDGFLKVYLESEDEESDSHLDDKTDN
GILPPLNIGQELILNEMTALERFTRPAARYSEASLVKKLEELGIGRPSTYAPTISTIQNR
GYVVKEDRDGRSRTYKTFTLKDGEVKSIVKSEITGTEKGKLFPTDIGAVVNDFLVEHFKG
IVDYNFTATVEKQFDEIANGLKEWTDMLKKFYQPFHSEVEDTLKNADRATGERLLGLDPE
SGKNVYTKVGRFGPMVQIGEMDEEDKPRYASLLKSQSVETISLEEALNLFQLPFQLSDYK
DKEVSVGVGRFGPYVKWGDTFISLPKNEDPLTVTNERAIEIIEEKISIDAPVAEYQGHPV
SKGKGRFGPFLKWKDLFINVPVRYNFDKLSQSDINELISAKIEKEANRYIQQWETEKIAI
ENGRWGPFIRFGKQMLKLGKNPTTGQKYTAEELSTVSLEDVKKLIVEQVPDAFDAKAKKT
GRKTTKK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaacttactcattgttgagtcccctgcgaaagcaaaaacgattgaaggttat
ttaggaaaggattttttagttaaatctagctatgggcacatacgtgaccttagaaaagac
gatggtgctatagaagtagacaataatttcaagcagcattatgaaatacctgcagataaa
aaacaggtagtagctgagctaaaaaaactggctaaaagcgctgaaaccgtatggttagct
tccgatgaggaccgcgagggagaagctattgcctggcatttatacgaatctttgggacta
aaagagaaccaaaccaaaaggattgtttttcacgagatcactaaacctgccattacaaaa
gcaattgaaaatccgcggacaatagattataaccttgttaatgcgcaacaagcgagacgc
gtattagacagattggttggttttgagctttctccggtactttggaagaaggttaagcct
tccctatcggcaggccgtgttcagtctgtggcggtacgcttaattgttgagagagaacgt
gaaattaaccttttcaatgcggaatcggcttataagataatagcgatattcagtactgga
aaaggtaaagaaatatttaaagcagaactctcccaaagatatgccgaacaaaaagaagca
gaaaagtttcttgaagattgtaaatcagcattgtataaaatcaatgatctggatataaga
cctaccaaaagaacccctgctcctccttttaccacttctacattacaacaggaagctggt
agaaagttaggcttctcggtttccagaacgatgtctattgcgcagagattgtacgaaacg
ggaaagattacctacatgaggaccgactcggtgaatctttctgaaactgctttaaatgca
tctgaaatagaaattaatagcgcttacggtagtaaatatcatcacaaacgaatatttaaa
actaaatccgccggtgcacaggaagcccacgaagctatcagacctactcattttgagtgg
catacgattgaaggtgatgcttctgaaaaaagattgtacgaactaatttggaagagagcc
attgcctcgcaaatgagtgaagctcaatttgaaaaaacaacagccagaattggtatatct
acaagaaaagaagaattagtggcgaatggagaagtacttaaattcgacggatttttgaaa
gtttatcttgaatctgaagacgaagaaagtgattctcatttagatgataaaacagacaat
ggtattcttccgcctttaaatataggccaggagcttattttaaatgaaatgactgctttg
gaaaggtttaccagacccgcagccagatacagtgaggcgtctttggtgaaaaaattagaa
gagttaggaataggaagaccatcaacctacgcccctactatatccacaatccaaaacagg
ggatatgtggtgaaagaagatagagatggccgtagcagaacttataagactttcactcta
aaagatggcgaagtgaaatcgatagtaaaaagtgaaattaccggtacagaaaaaggcaaa
cttttcccaacggatattggagcggttgtaaacgactttttagtagagcactttaaaggt
attgtagattacaactttacagctacagtagaaaagcaatttgatgaaattgcaaatggt
ttgaaagagtggactgatatgttaaagaaattctatcaacctttccattctgaagttgaa
gacaccttaaaaaatgcagacagagctaccggagaaagacttttaggtctggatccggag
tccggtaagaatgtttatacaaaagtaggcagatttggacctatggttcaaataggtgaa
atggacgaagaagataagccaagatatgccagcttgttaaaatcacagtcagttgagacc
atcagtttagaagaagcgcttaatctttttcagcttcctttccaattgagtgattataaa
gacaaagaagtttctgtaggtgtgggcagatttggtccttatgtaaaatggggcgatact
tttatttctttgcctaaaaatgaagatccgttaacagttaccaatgagcgtgcaatagaa
attattgaagaaaaaattagtatcgacgctcctgttgctgaatatcaaggccatccggta
tctaaaggtaaaggcagatttggacctttcttaaaatggaaagatctttttatcaatgtt
ccggtaagatataattttgacaaattgagccaatcagatatcaatgagttgatttctgca
aaaatagagaaagaagctaaccgatatatacaacagtgggaaactgaaaaaattgctatt
gaaaatggcagatgggggccttttatacgttttggtaaacagatgctaaaattaggtaaa
aatccgaccaccggacagaaatatacagcagaagaactttctactgtttctttagaagat
gtaaagaaacttatagttgaacaagttccagatgcttttgacgcaaaagcaaagaagaca
ggtagaaaaacaaccaagaaataa
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