Pseudopedobacter saltans: Pedsa_1024
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Entry
Pedsa_1024 CDS
T01430
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pedsa_1024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psn03019
]
Pedsa_1024
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_1024
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pedsa_1024
Messenger RNA biogenesis [BR:
psn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pedsa_1024
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pedsa_1024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
RQC
ResIII
MM_CoA_mutase
Motif
Other DBs
NCBI-ProteinID:
ADY51595
UniProt:
F0SB00
LinkDB
All DBs
Position
1216498..1218684
Genome browser
AA seq
728 aa
AA seq
DB search
MQIKKSLIDNLQTFFGFDNFKGDQEAIITSILNKEDTFVIMPTGGGKSICYQLPALMSEG
TALVISPLIALMKNQVDQLRAFGGYDSIAHFLNSSLTKTETNRVKEDVISGKTKLLYVAP
ESLIKQENIDFLKSVTVSFVAVDEAHCISEWGHDFRPEYRKIRQVVNNIREDIPIIALTA
TATPKVQTDIQKNLGMMNANVFKSSFNRGNLFYEVRPKGNVFKDIIKYIKNNPGKSGIVY
CLSRKKVEEVANALEINGIRSLPYHAGLDAKVRADTQDKFLMEEVDVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCIAFYSEKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYSESAVCRRKQILHYFGENFNEAGCGEMCDNCRAQKQYFQAEEYLLKLLN
MVKDFGEKFDDHHLINVLMGIETAQVHSYKQAQSVYFGTGKQDGVILWKSLIRQAVLNNF
LAKDVDNFGLLKLTKSGIAYLTSPYSLRFIMNREMVVVEEEDQTVKQGGGALDTQLLQML
KDLRKKIAKQKNLPPFVIFQDPSLEEMCTHYPVSMDELKHISGVGNGKAMKFGSPFIELI
KQYVEENEIDRPVDFVMKTTANKSALKVSIIQNIDRQISLEDIASAKGISFEDLLKEVES
IVSSGTKLNIAYYIDEVIDDDRQDEVFDYFKAAEVDSIDKALDELGTDEYNREEIQLMRI
KFLSELGN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaagaagtcgttaatagataatttacagacatttttcggtttcgataacttc
aagggcgaccaagaagctatcattactagtatcttaaataaagaagatacgtttgtaatt
atgcctacgggaggtgggaaatcaatttgttatcaattgccagcattgatgagtgaagga
acggcgctggttatttctcctttaatcgccttgatgaaaaatcaggtcgatcagttgaga
gctttcggaggttatgacagtatagcccatttcctaaactcttctttaaccaagactgaa
acaaatagagttaaagaggatgtaatttctggtaaaaccaagttactatatgtagcgccg
gagtctttaataaagcaggaaaacatagattttctgaaatcagttacggtttctttcgta
gctgtagacgaggcgcactgtatttcagaatgggggcatgactttcgcccggagtacaga
aagatcaggcaggtagttaataatatcagggaggatattccaattatagcgcttacagca
acggcaacacctaaggttcagaccgatattcagaaaaaccttgggatgatgaatgcaaat
gttttcaagtcgtcgtttaacagaggtaatttattttatgaagttaggccgaaggggaat
gtttttaaagatattatcaaatacattaaaaataaccctggtaaatctggtattgtttat
tgtctaagccgtaaaaaagtagaagaggtagctaatgcgcttgagataaatggaatccgg
tctttaccttatcacgctggtctggacgcaaaagttcgggccgatactcaggacaaattt
ctgatggaagaggtggacgttattgtagctacaatagcattcggtatgggaattgacaaa
cctgatgttcgctatgtaattcatcatgatatccctaaaagcatggaaggttactatcag
gaaaccggcagagcaggtagagacggcggcgaaggttactgtatcgctttttattctgag
aaggatgtagacaagcttgccaagttcatgaaagataaaccggtttctgaaagggaaatt
ggtacacagatattaaaagaagtaatcgattattcggagtcggcggtttgtagaagaaaa
cagattctgcattatttcggcgaaaattttaatgaagcaggttgtggcgaaatgtgcgat
aactgcagagcgcagaagcagtattttcaggctgaagaatatcttttgaaattattgaat
atggttaaggattttggcgaaaaattcgatgatcatcatttaattaatgttttaatggga
attgaaaccgctcaggtacattcctacaaacaagctcaatcagtatattttggaacaggt
aagcaagatggtgtaattctatggaaatcgcttatcagacaagccgttctaaataatttc
ctggcaaaagatgttgataattttggtttactaaagttaacaaaaagcggtattgcttat
ttaaccagcccatattctttacgttttatcatgaatagagaaatggttgttgttgaagaa
gaagaccaaacagtaaaacaaggtggtggcgctttggatacgcaactacttcaaatgctt
aaggatttgaggaaaaagattgcaaagcaaaaaaatctacctccttttgtgatttttcag
gatccttcacttgaagaaatgtgtacacattatccggtttctatggatgaattgaagcac
atttcgggagttggaaatggaaaagcgatgaaatttggttcgccgtttattgaattgatc
aaacaatatgttgaagaaaacgagatcgatcgtccggttgatttcgtaatgaaaactacg
gcaaataaatcggctttgaaagtttccattatccaaaatatagacagacagatttctcta
gaagatatcgcatctgctaaaggaatatctttcgaagatttattgaaagaagtagagtct
atcgtgagctcgggtacgaaattgaatatcgcatattatattgatgaggtaatagatgac
gataggcaagatgaagtttttgattactttaaagcagccgaagtagattctatagataag
gctttggatgaactaggaacagatgaatataacagagaggagatccagttgatgagaatt
aaattcttatctgaattgggtaactaa
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