Pseudopedobacter saltans: Pedsa_1072
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Entry
Pedsa_1072 CDS
T01430
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03030
DNA replication
psn03430
Mismatch repair
psn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pedsa_1072
03430 Mismatch repair
Pedsa_1072
03440 Homologous recombination
Pedsa_1072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psn03032
]
Pedsa_1072
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_1072
Enzymes [BR:
psn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pedsa_1072
DNA replication proteins [BR:
psn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pedsa_1072
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pedsa_1072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ADY51642
UniProt:
F0SBJ6
LinkDB
All DBs
Position
1280864..1281508
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AA seq
214 aa
AA seq
DB search
MKDYLLFIDTETSGLPKRWDLPYTNNLNWPYALQISWIIYHPDGTEIKRENYFINENDVT
ISKDSIKIHGITEDFLKSHGKKRKDILRKLAYDIKKFDPLIIGHFVELDIHVLSVDYLRA
RIKNPFKGRNFFCTMLKSHDFSKNPRIKFLKLSELFEYLFDKHPADLHNAEKDAEHAADC
FFELLKRGQITIQDVTKQKEYFLKQLNALEEQVC
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggattatttgttgtttattgatacagaaacctctgggcttcctaaacgatgggat
cttccctataccaacaatttaaattggccatacgctttgcagatatcctggattatctat
catccggacggaactgaaataaaacgtgagaattactttatcaatgaaaatgatgtcact
attagtaaggattctataaagatccatggcataacagaagactttctaaaatcacatgga
aaaaaaagaaaagatatcttacgtaaattagcttatgatatcaagaaatttgatccactt
ataataggtcattttgtagagcttgatatacatgtattaagtgttgattatttgcgggca
aggataaaaaatccatttaaaggacgtaatttcttttgtacaatgctaaagagtcatgat
ttttcaaagaatccgagaattaaatttcttaaactctctgaattgttcgagtatctgttt
gataaacatcccgcagatctacacaatgctgaaaaagatgccgaacacgctgcagattgt
tttttcgagcttttaaaaagaggacaaatcactatccaagacgtaacaaaacaaaaggag
tattttttaaaacaattaaatgccctggaagaacaagtctgttaa
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