Pseudopedobacter saltans: Pedsa_1239
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Entry
Pedsa_1239 CDS
T01430
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03420
Nucleotide excision repair
psn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pedsa_1239
03430 Mismatch repair
Pedsa_1239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_1239
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pedsa_1239
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pedsa_1239
MMR (mismatch excision repair)
Other MMR factors
Pedsa_1239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_30
ResIII
AAA_12
AAA_11
Bac_DnaA
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADY51807
UniProt:
F0SD50
LinkDB
All DBs
Position
1463805..1466111
Genome browser
AA seq
768 aa
AA seq
DB search
MILDYLKGLNSSQRQAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFQILVLTF
TNKAAKEMRDRITKVVGPEAKNIWMGTFHSIFAKILRVEANKLGYPSNFTIYDTDDSKSL
IKAILKEMNLDDKLYNPNFVYGRISMAKNNLISAAEYQNNEQIQADDFSTGRGQLGKVYA
TYTARCFKAGAMDFDDLLFKTNVLLKDHPDVLYKYQHKFKYLMVDEYQDTNFSQYLIVKK
LAAVTYNLCVVGDDAQSIYGFRGANIQNILNFQKDYPDVKVFKLEQNYRSTQNIVNVANS
IIKNNANQLEKNVFSDNDEGDKIKITRSYSDNEEGKSVAESILQERSIKSLDWNDFAVLY
RTNAQSRSMEEALRKANIPYKIYGGMSFYQRKEIKDLIAYFRLTFNNNDEEAFKRVINYP
ARGIGKTTIDKMILAADQNGKTLFDIATNAFQFLDNRAATAVNNFATTIQSFAAIAKNNN
AFEAASHIAQHSGLLKDLYEDKSVEGLARYENIQELLNGIKEFSEREDIEDRGLSVFMED
VALLTNDDNQKPEDKDTVSLMTIHSSKGLEFNQVYVVGLEENLFPSQMSLNSRADLEEER
RLFYVAVTRAEKKLHISYATSRFKFGTLVNSEPSRFLDEIDPRYLEIELPKKAFSSNPSS
FDGERSAWKSKTSEAPASTDVFSKPKPASQKVKTTSLLSKAHVPTPGFKPEDTSNLQVGE
IVEHERFGFGKVINLEGNKPDIKATIFFKEIGQKQLLLKFAKLRIVKS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
ttgattttggattatttaaaaggattaaactcttcgcaaagacaggctgttgaacagaca
gaggggccagttatgattgtagccggcgctggttcgggaaaaacaagagtaattacttat
agagttgcacatcttatacaaaaaggcgtagacccttttcagattttggtattgacattt
accaacaaagctgcaaaagagatgcgcgaccgtattacaaaggttgtaggtcccgaagca
aaaaatatatggatgggaaccttccactctatctttgccaaaattttgagggtcgaagcg
aataaacttggttatcctagcaatttcaccatatacgatactgacgacagtaaaagtctg
atcaaagctattctgaaagagatgaatctggacgataagctatataatcccaattttgtt
tacggcagaatctccatggcaaaaaacaacttgatttctgctgcagaatatcaaaataat
gaacaaatccaggcggatgatttttctaccggacgtggtcaattaggaaaagtttatgct
acctatactgccagatgttttaaagctggtgctatggactttgatgatttgttattcaag
acgaatgttcttttaaaggaccatccagatgttttgtataaatatcagcacaagtttaaa
tatttaatggtagatgagtatcaggacaccaacttttctcaatacctgattgtaaaaaaa
ttggccgccgtaacctacaatttatgcgttgtcggagacgatgcgcaaagtatttacggt
ttcaggggagcaaatattcagaacatactcaactttcaaaaggattatccggatgttaaa
gtattcaaattagaacaaaattaccgttcgacacagaatattgtaaatgttgctaacagc
atcataaaaaataacgccaatcaattggaaaagaatgtcttttctgataatgatgagggt
gacaagataaaaattaccagatcttattccgataacgaagagggtaagagcgtagcagaa
tccatattgcaagaaagaagcattaaatctttagattggaatgattttgctgttctgtat
agaactaatgcgcaatccagatctatggaggaagctttaagaaaagccaatattccttat
aagatttacggtggaatgtctttttatcaaaggaaagaaatcaaggatttaatcgcttat
ttcaggttaacttttaacaataatgacgaagaagcttttaaacgggtaattaattacccc
gccagaggaattgggaaaaccactatagataaaatgattcttgctgccgaccaaaacggt
aaaactttatttgatattgccaccaatgcctttcagtttttagataacagggcagctacc
gcagtcaacaatttcgcaacaacaatacaaagttttgctgctatagcgaaaaacaacaac
gctttcgaagcggcctctcatatcgcacaacattcaggccttttaaaggatctatatgaa
gataaatccgttgaaggtttagccagatacgaaaatattcaggagttgctgaatggtatt
aaggaattttcggaacgtgaagatattgaagatcggggtttaagcgttttcatggaagat
gtcgctttattgacaaacgatgacaaccaaaaaccagaagataaagacacggtatcttta
atgacgatacactcttctaaaggtttggaatttaatcaggtttatgttgttggactagaa
gaaaacctcttcccaagtcagatgtccttaaattccagagcggatttagaagaagaacgc
cgattattttatgttgcagtaacaagagctgaaaaaaaactgcatataagctatgctact
tcgagatttaaatttggaacgttagtaaattccgaaccttctcgtttccttgatgaaata
gacccgagatatttagaaattgaactgccgaaaaaagcttttagttcaaatccatcttct
tttgatggcgaacgcagtgcatggaaatccaaaacgtctgaagctcctgcttcaacagat
gtattttcgaaaccaaaacctgcttctcaaaaggttaaaacaacttctttgctatcgaaa
gcgcatgttcctacccccggatttaaaccggaagatacttctaacttacaggttggagag
attgtggaacatgaaagatttggttttggaaaagtgataaatctggaaggtaataaacca
gatatcaaggcaactattttctttaaagagatcggccaaaagcaattattattaaaattt
gccaaacttcgtatcgttaaatcttaa
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