Pseudopedobacter saltans: Pedsa_2100
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Entry
Pedsa_2100 CDS
T01430
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psn
Pseudopedobacter saltans
Pathway
psn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pedsa_2100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psn03021
]
Pedsa_2100
03019 Messenger RNA biogenesis [BR:
psn03019
]
Pedsa_2100
Transcription machinery [BR:
psn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pedsa_2100
Messenger RNA biogenesis [BR:
psn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pedsa_2100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
AAA_22
AAA_25
ATPase_2
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
ADY52652
UniProt:
F0SB17
LinkDB
All DBs
Position
2461665..2463263
Genome browser
AA seq
532 aa
AA seq
DB search
MFDINELNDKLVSELREIAKTFGVGNADDLRKAELIAKIKEQHELISAAKSAGAIEEIKE
EKPKKRARTVKTTTTVEEVKPKSPVKEASLFDNTESESNTPSEASAGEKRLRKAAPVKEA
ATVSETPLVTNAPVEEQKSTESERPQQQRPGGKRAQDSVFDFDNVITNEGVLEIMPDGYG
FLRSSDYNYLTSPDDIYVSQSQIKLFGLKTGDTIRGSIRPPKEGEKYFPLVRVEAINGRV
PAEVRDRIPFDYLTPLFPSERLNLFTKPGDYSTRIMDLFTPIGKGQRGLIVAQPKTGKTN
LLKEVANAIAANHPEVYLIILLIDERPEEVTDMARSVRAEVISSTFDEPAERHVKIANIV
LEKAKRMVECGHDVVILLDSITRLARAYNTVAPASGKILSGGVDANALHKPKRFFGAARN
IEDGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAIDITASSTR
RDDLLLDKETLQRVWILRNHLADMNSQEAMEFLLTQVRGTKSNEEFLVSMNS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatataaacgaattgaacgacaagcttgtatccgagcttcgtgaaattgctaaa
acgtttggtgtaggcaatgctgatgacttacgtaaggcagaattgatagcaaaaataaaa
gagcaacacgaattaatcagtgcggcaaaatctgcgggagctattgaagaaatcaaagag
gaaaagcctaaaaaaagagctcgtacggttaaaacaaccactacagttgaggaagttaaa
ccaaaatctcctgttaaagaagcttcattatttgacaatactgaatctgaaagtaacact
ccatctgaagcttcagccggagaaaagagacttagaaaagctgcgcctgtaaaagaggcc
gcgactgtatcagaaactccattggttactaacgctcctgttgaagagcaaaaaagtacg
gaaagtgagcgtcctcaacaacaaagacctggaggaaaaagagctcaggactctgttttt
gattttgacaatgtaattactaatgaaggtgttttagaaatcatgcctgatggttatggc
tttcttcgctcttctgattataattacctaacctctcctgatgatatttatgtatctcaa
tctcaaatcaaattatttggtttaaaaactggtgatactattagaggaagcatcagaccg
cctaaagagggtgagaagtattttcctttggttcgagtagaagctatcaacggaagagtt
cctgctgaagttagagacagaatcccttttgattacttaacacctcttttcccttctgaa
agattgaatttattcacaaaacctggagattattctaccagaattatggatttgtttact
cctatcggaaaaggacaacgtggtttaattgttgcgcagcctaaaactggtaaaaccaat
ttattgaaagaagttgccaatgcaattgcagcaaaccatccagaagtttatttaattatc
ttattaatagatgagcgccccgaagaggttacagacatggctagaagcgtaagagccgaa
gttatttcttctacttttgacgagccagcagaacgccatgttaaaatcgcaaatattgtt
ttagagaaagctaaaagaatggttgaatgtggccatgatgttgtaatcttgttagattct
atcacccgtttagcgagagcctacaatactgtagcacctgcgtctggtaagatattatca
ggtggtgttgatgcaaatgctttacacaaaccaaaacgtttctttggtgccgccagaaat
atcgaagacggtggttctttaacaatattggcaactgccttaactgatacaggatctaaa
atggacgaagttatctttgaagaattcaaaggtacgggtaacatggagctacaattagat
agaaaattatctaacaaacgtattttcccagctatcgacattacagcttcaagcacaaga
agagacgatttgttattagacaaagaaacacttcaaagagtttggattttaagaaaccac
ttagccgatatgaattctcaggaagctatggagttcttattgactcaagtaagaggcacc
aaatccaatgaagaatttttagtttctatgaacagctaa
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