Pseudopedobacter saltans: Pedsa_2481
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Entry
Pedsa_2481 CDS
T01430
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pedsa_2481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psn03019
]
Pedsa_2481
03009 Ribosome biogenesis [BR:
psn03009
]
Pedsa_2481
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pedsa_2481
Messenger RNA biogenesis [BR:
psn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pedsa_2481
Ribosome biogenesis [BR:
psn03009
]
Prokaryotic type
rRNA helicases
Pedsa_2481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SNF2-rel_dom
RSF
Glyco_H_20C_C
Motif
Other DBs
NCBI-ProteinID:
ADY53026
UniProt:
F0SEW0
LinkDB
All DBs
Position
complement(2900858..2902684)
Genome browser
AA seq
608 aa
AA seq
DB search
MNPFNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLP
LLELIDNTKNHPQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIK
RGVQIVVATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKT
WLFSATMPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKARDKYAAFKRIVDFN
PDIFGIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQLLIATD
VAARGIDVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSREIHKIRQIEKV
IGKQFTKAEIPTGFDVVEKQLFSLVKRVHDVEVNDEQIEQYLPRIMDDFKDLSTEDVIKR
FVSLEFNMLLDYYKNAPDLNASEERGRERGERGERRGGEGRNGYSRLFINLGSVDDFTRG
DLLGYICNNTGISGKAIGRIDMKGVFSFFEVEEDKTQQVIDSFKTVDFHGRSVRIEVSGE
PARGGGERRRSSSGGERRGGFGGGNRSNGGGGFRDFSGGGNRRREGAGAGSGDRRRSEGG
NGGARRRR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaacccattcaatgaactggggatccgtcatgatattgttaatgcgataactgagtta
ggatttacaaatccaactccaatccaggaaagtgccattccagtcttgttatcaggcagc
aacgattttgtcggattagcccaaaccggaacagggaaaacggccgcatttggtctccct
ctgttagagctgatagacaacacaaaaaatcacccacaagcattaattttatgcccaaca
cgtgagttgtgtttacagatcagtaatgatttaaaaaatttctctaaaaacttaaaaaat
gttaatgtagtagccgtttacggtggtgcaaacattgttaatcaattaagagaaataaaa
cgcggtgtacagatagtagtggctacgccgggccgtatgttagacattatcaatagaaaa
gctattgatttctctaatgtaaattatgttgttttagatgaagccgatgaaatgttaaac
atgggctttcaggatgatatcaacgatatcctgtctacaacaccagatactaaaaaaaca
tggttgttctctgcaacaatgccgaaagaggtaagaagaattgcagaaaactacatgact
aatcctcacgagcttacagtaggaaagcaaaatagtggaaatgcgaatatcgagcatgaa
tactatattgttaaagcccgtgataaatacgctgcttttaaacgcatcgtagattttaat
cctgatatttttggtattgttttctgtcgtactaaaattgaaacacaggaaatagcagag
tctttggtaaaggacggctacaatgcagactcattacatggtgacttgtcgcaacaacaa
cgtgataaggtaatgaaacgttaccgtgagaaaagcttacagcttttaattgctactgac
gttgctgccagaggtattgacgttaataacgtaactcacgtaattaactactctttacct
gatgagattgaaaactatacgcatagaagtggcagaactgcaagggcaggtaaaacaggt
gtttctatagcgattatcaattccagagagattcataaaatccgtcagattgagaaagtt
attggaaaacaatttactaaagcagaaattcctactggttttgatgtggtagaaaagcaa
ttgttcagtttagtgaaacgtgttcatgacgttgaagtaaacgatgagcaaattgagcag
tatttgccaagaattatggacgattttaaagatctttctacagaggacgtaatcaaacgt
tttgtgtctttagaatttaacatgttgttggattactacaaaaatgcacctgatctaaac
gcttctgaggaaagaggaagagaaagaggtgagagaggtgaaagaagaggtggtgaagga
cgtaatggttattccagattgttcatcaatttgggttctgttgacgactttactcgcggt
gatcttttaggctatatctgtaataatacaggtatcagtggtaaagctataggtcgaatc
gatatgaaaggtgttttctcattcttcgaagtagaagaagataaaactcaacaggttatt
gattcatttaaaactgtagatttccacggacgctctgtaagaattgaagtttctggtgaa
ccagccagaggtggaggtgaaagacgcagaagcagtagtggtggcgagagaagaggaggc
tttggaggcggtaaccgtagtaacggtggcggtggattcagagatttttctggaggtgga
aatagaagaagagaaggtgctggcgcaggaagcggagacagaagaagaagcgaaggcgga
aacggtggagctagaagaagaagataa
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