Pseudopedobacter saltans: Pedsa_3785
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Entry
Pedsa_3785 CDS
T01430
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pedsa_3785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psn03019
]
Pedsa_3785
Messenger RNA biogenesis [BR:
psn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pedsa_3785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
DUF4954
Ribosomal_S18
Motif
Other DBs
NCBI-ProteinID:
ADY54314
UniProt:
F0S741
LinkDB
All DBs
Position
4553832..4555394
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AA seq
520 aa
AA seq
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MEFFIYLAIAIIAFGGGVLAGRYLLRQLLKQQEIAAQTKVKKILKDAEVNAELLKKNKLL
EAKEKFLQLKADHEQEVNQRNQVVAQKENTLKQKEQSLNQKLENQNRKEQELDNQRKKLD
HQLEIVEKKQEEVEALKAQHIKELENVAGLSAEEAKSQLEANLKEEARTNAMVHIKDIVD
EAKLTAAKEAKKVVIQTIQRTATESAIENTVSIFNIENDEIKGRIIGREGRNIRALEAAT
GIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEVVAKTQKQIEEEIV
EIGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLQHSREVANFCATMASELGLNAKL
AKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPDVCNAIGAHHDEIEMTSLISPIV
QACDAISGARPGARREVVESYIRRLKELESLAMSYPGVEKTFAIQAGRELRVVVESEKIS
DAQSEILAADISNRIQTEMTYPGQIKVTVIRETRSVAYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaattttttatttatctcgctatagccattattgccttcggaggaggagttttagct
ggaagatatttgctgagacagctacttaaacagcaggaaattgctgcccaaaccaaagtt
aaaaagatattaaaagacgcggaagttaatgctgaactattaaagaagaataaacttcta
gaagcaaaggagaaatttttgcagttgaaagctgatcacgaacaggaggttaaccagcgt
aaccaggttgtggcacagaaagaaaatactttgaaacaaaaagaacaatctttaaatcaa
aagctggaaaatcaaaacagaaaagagcaggaattagataatcagcgaaaaaaattagac
catcaacttgagattgttgaaaagaagcaagaggaggtagaggcgcttaaggctcaacat
atcaaagaattggaaaatgtagcggggttatctgctgaagaagccaaatctcaactggaa
gccaatttgaaagaggaagccagaacaaatgctatggtacatattaaagatatcgtagac
gaggctaaacttaccgctgcaaaagaggctaaaaaagttgtaatacagactatccagaga
actgcaactgaatcggctatcgaaaatactgtgtcaatctttaatatcgaaaatgatgaa
attaaaggtcgtattattggtagagaaggtagaaacatcagagctttagaagcggccaca
ggaattgaaattattgttgatgacacacctgaagctattattctttctggttttgatcct
gtgagacgcgaaattgcccgtttggcattgcaccgtttggtaacggacggtcgtatacat
cctgcgagaatagaggaagttgttgcgaaaactcaaaagcaaattgaagaagaaattgta
gaaataggtgagaggactgttattgatttgggtattcacggtttgcatcccgaattgata
aggatggtaggtcgtatgagataccgttcttcttatggtcagaacttattgcaacactcc
agggaggtagctaacttctgtgctacaatggcctcagaattaggtttaaatgccaaattg
gctaaaagagctgggcttttacatgatattggaaaggtgccagacgacaatccggaatta
cctcatgcaatattaggtatgcaattggcagagaaatataaggagcatcctgatgtttgt
aatgctattggtgctcaccatgacgaaattgaaatgacatctttaatttctccaattgta
caggcctgtgatgctatttctggcgcaagaccaggtgcaagaagagaagtagtggaaagc
tatatccgcaggttgaaagagttggaaagtttggctatgtcttatccgggagtagagaaa
acgtttgcgattcaggcgggtagagagcttagggttgttgtagagagcgagaaaatcagc
gatgctcaatcagagattttagcagcggatatatccaacagaattcaaacagaaatgact
tatccggggcaaatcaaggttacggtaatcagagaaacaaggtctgtggcttacgcgaaa
taa
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