Pseudomonas sp. NC02: C0058_01300
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Entry
C0058_01300 CDS
T10251
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0058_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psnc03019
]
C0058_01300
03400 DNA repair and recombination proteins [BR:
psnc03400
]
C0058_01300
Enzymes [BR:
psnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0058_01300
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0058_01300
DNA repair and recombination proteins [BR:
psnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0058_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUO20694
LinkDB
All DBs
Position
274202..276139
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AA seq
645 aa
AA seq
DB search
MHNTLQQVFGYPQFRLGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMVSVERLKNERFR
NFLQSVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFRIPQALLLTATATPKVIADM
QAKFAIAPDDVITTGFYRSNLNLLVEPVSGQDKRRRLVTWMQERANQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLAHDKREAIQKRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSECLVLANRDSLNILENFVYGDTPEQEGIRRVLEEIQ
AVRADGQWEFMLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFTGERQQFVAAIIQVCKRAKTWATVDFDALYQQHQAERSRVVKALDYFQEQGLIEME
SRQMTEVYALLNTDFDPQALSTELYTGFKQHEVTEVARIHAMLDLFATQECLGYRLAHYF
GDENAPRQCGHCSVCHGNVAHLPAPPNLPPLVDKNFLALCGEFIHSHHEYSGDLPSAERL
TRFLCGLSVPLFTKLKARGIPGFAVLEEYPYAEVREWAEAGLEAL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctccaacaggtctttggttatccacagtttcgtttgggccaggaggcg
gtggtcagtgccgtgctggccggccgttcggcggcggcgatttttcccaccggttccggc
aagtccctgtgttatcaactttccgccgtgttgctgccgcacctgacgctggtggtgtcg
ccgttgctggcgctgatgcaggaccagttgggtttcctgcagcgccacggtatctcggcg
ggcagcatcgactcggcccagagccgcgatgatgccaatgacgtcatggcccgggcgcgt
tcgggcgagctgaagatcctgatggtttccgtggagcgcttgaagaacgagcgctttcgc
aacttcctgcaaagcgtgccgatctcgctgctggtggtggatgaggctcactgcatttcc
gaatggggccataactttcgcccggactacctgaagctgccggattaccaacgccagttc
cgcatcccccaggcgctgctgctgaccgccacggcgacgcccaaggtgatcgctgacatg
caggccaagttcgccattgcacctgacgatgtgatcaccaccggcttctatcgctccaac
ctcaacctgctggttgagcccgtcagtggccaggacaagcgacgacggctggtgacgtgg
atgcaggagcgagccaatcagccaagcatcgtctacgtaacgctgcaaaaaaccgcggag
cagattgccgagcatttgaatcgcaatggaatccaggccgaggcttatcacgcgggcctg
gctcacgataagcgggaggccattcagaagcgattcatgggcggtcagtccaactgcatc
gtcgccaccattgccttcggcatgggcatcgacaaaagcgatatccgcaacgtggtgcac
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgtgccgggcgtgac
gggcagccgtctgagtgtctggttctggccaaccgcgacagcctgaatatcctggaaaac
tttgtgtacggcgatacgccggaacaggaaggtattcgccgagtcctggaggaaatacag
gcggtccgtgccgatggacagtgggagtttatgctccgctcactgtcggaccacagcaac
atccgtgaactaccgctgaagaccttgctcgtgcagcttgaactcaagggtgtgattgcg
ccgcgctacgcgttttatgccgaataccgcttcaagtatttgattgaaccagaggcattg
ctggcgcgttttaccggcgagcggcagcagtttgtcgcagcgattatccaggtctgcaaa
cgggcgaaaacctgggcgacggtggacttcgacgcgctgtatcaacagcaccaggccgag
cgcagccgggtggtgaaggccctggattactttcaggaacaaggcctgatcgagatggaa
agccggcagatgaccgaggtttacgccctgctgaataccgacttcgatccacaggcgctg
agcacggagttatacacaggcttcaagcagcatgaggtgacggaggtggcgcgaattcac
gccatgctggatctgttcgcgacacaggagtgcctgggttaccgcctggcgcactatttc
ggcgatgaaaacgcgccccggcagtgcgggcactgctcggtgtgccacggtaacgtcgcc
cacttgccggcgccgccgaacttgccgccgcttgtggataaaaactttctcgcgctgtgc
ggtgaatttatccacagccaccatgagtacagcggcgacttgccaagcgcggagcggctg
acacggtttttatgcggtctcagcgtgccgttgtttaccaagctgaaggcacgagggatt
ccaggtttcgcggtactggaggagtatccctatgcagaggttcgtgaatgggcggaggca
gggttggaggcactctga
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