KEGG   Pseudomonas sp. NC02: C0058_04470
Entry
C0058_04470       CDS       T10251                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C0058_04470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psnc03021]
    C0058_04470
Transcription machinery [BR:psnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C0058_04470
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_11 HTH_29 HTH_28 HemN_C DUF722 HTH_3 GerE HTH_Tnp_ISL3 HTH_40 HTH_7 PhyR_sigma-like HTH_DeoR HTH_38 Terminase_5 HTH_31 Xre-like-HTH HTH_24 HTH_36
Other DBs
NCBI-ProteinID: AUO21270
LinkDB
Position
complement(1001936..1002451)
AA seq 171 aa
MKLSSPTDAPTLDALYRGYHGWLLTWLRRRVHCSHQAADVAQDTFVRLLASGTYVAPGEP
RAYLATIARRLLMDNGRRRRLEQAYREELERCAAYLEQAPSPEQILQAAQMLEAIDRALA
RMHKRIRDTFILRYLEGLDQAQIAQRLGVSVRTVQNDLVEALLACDACAQP
NT seq 516 nt   +upstreamnt  +downstreamnt
atgaagctgtcttcgcccaccgacgctcctacgctcgatgcgctgtaccgcggctaccac
ggctggttgttgacctggttgcggcgtcgcgtgcattgctcccatcaggcggccgacgtg
gcgcaagacactttcgtacgcttgctggcatcgggtacttacgtggcgccgggtgagcca
cgggcttatctggccaccatcgcgcgccggttgctgatggacaatggccgccgccgacgc
ctggaacaggcctaccgcgaagagctcgaacgctgcgccgcgtaccttgaacaggcgcct
tcgccggagcagatcctgcaagccgcgcaaatgcttgaggcgatcgaccgggccttggca
cgcatgcacaagcggatccgcgacaccttcatcctgcgttacctcgaaggcctggaccag
gcgcaaatcgcccagcgcctgggtgtctcggtgcgcacagtacagaacgatctggtggaa
gccttgctggcgtgcgatgcgtgcgcccagccatga

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