Pseudomonas sp. NC02: C0058_04470
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Entry
C0058_04470 CDS
T10251
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0058_04470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnc03021
]
C0058_04470
Transcription machinery [BR:
psnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0058_04470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_11
HTH_29
HTH_28
HemN_C
DUF722
HTH_3
GerE
HTH_Tnp_ISL3
HTH_40
HTH_7
PhyR_sigma-like
HTH_DeoR
HTH_38
Terminase_5
HTH_31
Xre-like-HTH
HTH_24
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AUO21270
LinkDB
All DBs
Position
complement(1001936..1002451)
Genome browser
AA seq
171 aa
AA seq
DB search
MKLSSPTDAPTLDALYRGYHGWLLTWLRRRVHCSHQAADVAQDTFVRLLASGTYVAPGEP
RAYLATIARRLLMDNGRRRRLEQAYREELERCAAYLEQAPSPEQILQAAQMLEAIDRALA
RMHKRIRDTFILRYLEGLDQAQIAQRLGVSVRTVQNDLVEALLACDACAQP
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtcttcgcccaccgacgctcctacgctcgatgcgctgtaccgcggctaccac
ggctggttgttgacctggttgcggcgtcgcgtgcattgctcccatcaggcggccgacgtg
gcgcaagacactttcgtacgcttgctggcatcgggtacttacgtggcgccgggtgagcca
cgggcttatctggccaccatcgcgcgccggttgctgatggacaatggccgccgccgacgc
ctggaacaggcctaccgcgaagagctcgaacgctgcgccgcgtaccttgaacaggcgcct
tcgccggagcagatcctgcaagccgcgcaaatgcttgaggcgatcgaccgggccttggca
cgcatgcacaagcggatccgcgacaccttcatcctgcgttacctcgaaggcctggaccag
gcgcaaatcgcccagcgcctgggtgtctcggtgcgcacagtacagaacgatctggtggaa
gccttgctggcgtgcgatgcgtgcgcccagccatga
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integrated database retrieval system