Pseudomonas sp. NC02: C0058_05050
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Entry
C0058_05050 CDS
T10251
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0058_05050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnc03021
]
C0058_05050
Transcription machinery [BR:
psnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0058_05050
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_20
HTH_24
GerE
HTH_28
PhyR_sigma-like
Trp_repressor
TnsD
HTH_10
Xre-like-HTH
HTH_11
HTH_5
HTH_40
HTH_38
Motif
Other DBs
NCBI-ProteinID:
AUO21377
LinkDB
All DBs
Position
complement(1109295..1109783)
Genome browser
AA seq
162 aa
AA seq
DB search
MQPSNTVEVLYHDHHHWLTGWLRRKLGCPESAADLAQDTFIRVLTARETPTLIEPRAFLT
AIAKRVLCNHYRRQDLERAYIDALAQMPEHVAPSEEERAIILQTLMELDQLLDGLAPLVK
RAFLLSQLDGLTYAQIGAELGISIATVKRHLNKAAMRCYFAL
NT seq
489 nt
NT seq
+upstream
nt +downstream
nt
ttgcagccgtccaacaccgtcgaagtcctgtaccacgaccatcaccactggctcaccggc
tggttgcgacgcaagctcggctgcccggaaagcgccgccgacctggcccaggacaccttc
atccgcgtgctcaccgcacgggaaacaccgacgctgatcgaacctcgcgccttcctcacc
gccatcgccaagcgtgtgctgtgcaaccattaccgccgccaggacctggagcgcgcctac
atcgacgccctggcacaaatgcccgaacacgtggcgccgtcggaggaagagcgggcaatc
atcctgcaaaccctgatggagctggaccagttgctggatggcctggcgcccctggtcaaa
cgcgcgttcctgctgtcccagctcgacggcctgacctacgcgcaaatcggcgcggaactg
gggatctccatcgccacggtcaagcgccatctgaataaagcggcgatgcgctgctacttc
gccctatga
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integrated database retrieval system