KEGG   Pseudomonas sp. NC02: C0058_05050
Entry
C0058_05050       CDS       T10251                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C0058_05050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psnc03021]
    C0058_05050
Transcription machinery [BR:psnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C0058_05050
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_20 HTH_24 GerE HTH_28 PhyR_sigma-like Trp_repressor TnsD HTH_10 Xre-like-HTH HTH_11 HTH_5 HTH_40 HTH_38
Other DBs
NCBI-ProteinID: AUO21377
LinkDB
Position
complement(1109295..1109783)
AA seq 162 aa
MQPSNTVEVLYHDHHHWLTGWLRRKLGCPESAADLAQDTFIRVLTARETPTLIEPRAFLT
AIAKRVLCNHYRRQDLERAYIDALAQMPEHVAPSEEERAIILQTLMELDQLLDGLAPLVK
RAFLLSQLDGLTYAQIGAELGISIATVKRHLNKAAMRCYFAL
NT seq 489 nt   +upstreamnt  +downstreamnt
ttgcagccgtccaacaccgtcgaagtcctgtaccacgaccatcaccactggctcaccggc
tggttgcgacgcaagctcggctgcccggaaagcgccgccgacctggcccaggacaccttc
atccgcgtgctcaccgcacgggaaacaccgacgctgatcgaacctcgcgccttcctcacc
gccatcgccaagcgtgtgctgtgcaaccattaccgccgccaggacctggagcgcgcctac
atcgacgccctggcacaaatgcccgaacacgtggcgccgtcggaggaagagcgggcaatc
atcctgcaaaccctgatggagctggaccagttgctggatggcctggcgcccctggtcaaa
cgcgcgttcctgctgtcccagctcgacggcctgacctacgcgcaaatcggcgcggaactg
gggatctccatcgccacggtcaagcgccatctgaataaagcggcgatgcgctgctacttc
gccctatga

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