Pseudomonas sp. NC02: C0058_06305
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Entry
C0058_06305 CDS
T10251
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03030
DNA replication
psnc03430
Mismatch repair
psnc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C0058_06305
03430 Mismatch repair
C0058_06305
03440 Homologous recombination
C0058_06305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psnc03032
]
C0058_06305
03400 DNA repair and recombination proteins [BR:
psnc03400
]
C0058_06305
Enzymes [BR:
psnc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C0058_06305
DNA replication proteins [BR:
psnc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C0058_06305
DNA repair and recombination proteins [BR:
psnc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C0058_06305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AUO21619
LinkDB
All DBs
Position
1370012..1373533
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPHEAEVLAREWMEVFPDRFYLEIQRTNRPNDEEQ
LHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKD
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTDALKGDQLRWLGDLLKRHRGACPVTMEYTGNDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaacccctggtcaaaaccctggtgggcatgaacatgcctgccgtggcggtg
accgaccagaacaacatgtgttccctggtcaagttctacaaggccgccatgggcgccggc
atcaagccgatctgcggtgccgacctgtggctgtcgaacaaggacccggataacccactg
agccgcatcagcctgttggcgatgaacggcgtgggttaccgcaacctcaccgaactgatt
tcccgtggctttatcgatggccagcgcaatggctcgatcatcatcgagcgcgagtgggtg
gccgaagccagcgaagggctgatcatgctctcggcggccaaagaaggtgaaatcggtatc
gcgctgttgggcggcaatcctcatgaggctgaagtgctcgcccgtgagtggatggaggtg
ttccccgaccgtttctacctggaaatccagcgcaccaaccgccccaacgatgaagagcag
ttgcacgccgctgtggccctggctgaaaagcttggcgcgccgctggtggcgaccaacgat
gtacgctttatcaagaaggaagacttcgaggcccacgaaacccgcgtatgcatcggtgaa
ggccgggcgctggacgatccgcgccgctcgaaaaactacagcgaagagcagtacctcaaa
agcgccgatgaaatggccgagttgttcagtgacctgcccgaggccctggaaaactctgtc
gaaattgccaagcgctgcaatattgaagtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgacgagtatttccgcaaggtctcgttcgacggtttg
gaggaacgcctgagcgtcctgctgcccaaggacaccactgaagattatgaagccaagcgc
caggtctacgtcgaccgcctgaatttcgagctggatatcattatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggcgtgccggtg
gggcctggccgtggatcgggtgctgggtcgctggtggcctatgtgcagaagatcaccgac
ctcgacccgctggaatacgacctgctgttcgaacgtttccttaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggttattgagtacgtg
gccgagaaatacggacgcaacgcagtaagccagatcatcaccttcggttccatggcggcg
aaagcggtaattcgcgacgtggcccgggtacagggcaagtcctacggcctggctgaccgc
ctgtcgaagatgattccgtttgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgggacttcatcaaggtcgatgaagaagcggctgaaatctgggacatggcg
cgcaagctcgaaggcgtggtgcgtaacgtcggtaaacacgccggtggtgtagtaatcgcg
cctaccaagctgaccgacttttcgccgatctattgcgacgaagaaggcgacggcctggta
acccagttcgacaaggacgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcgactgggcgctgaagaccatcaaccgcgaccgcgccaag
gtcaatgagccaccgctggatatcgcgtttatcccgctggatgacaagccgacctacagc
ctgctgcaaaaagccgaaaccacggccgtgttccagcttgaatcccgcggcatgaaagag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacgggcgt
gccgagctggcttacccgcactccgactaccagtacgaaggtctcaagccggtactggca
ccgacctacggcatcatcctgtatcaagaacaggtgatgcagattgcccaggtcatggcc
ggctataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggcttcattgaaggttgcgccaccaacaacatcgatgcc
gacctggccggtaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaaa
tcccactctgccgcctatggcctggtgtcttaccagactgcgtggctgaaggctcactac
ccggcgccgttcatggcggcggtactgtctgcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgcctcgacgcgccggacgtgaacact
tccgagttcaagttcacggtgaacgacgaaggccgcatcatctatggcctcggtgcgatc
aagggcgtgggcgaaggcccggtggaggcgattaccgaagcgcgtcaggacgggccgttc
aaggacctgttcgatttctgcgcccgggtcgacctcaagcgcatcaacaaacgtactctg
gatggcttgatccgcagcggcgccctggatcgcctgggcccgtacttccatgatgagccg
aaggcgtaccaggccaatatcgaccgcaaccgcgcggtattgctgaccgccatggaagaa
gcgatcaaggccgccgagcagaccgcacgcacccacgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaagatgccgacgtctacgccaaccatcgcaaggccaaggac
ctgaccctcaaggagcgcctcaagggtgagaaagacaccctgggcctgtacctcaccggt
cacccgattgacgaatatgaaggtgaaatccggcgtttcgcccgccagcgcatcatcgac
ctgaagccggcgcgggatacccagaccgtcgcaggcatgatcatcgcgctgcgggtgatg
aagaataaaaagggcgacaagatgggtttcatcaccctcgacgaccgctcgggccggatc
gaagcctcgctgtttgccgatgccttccattccgcccagtcgctgttgcagaccgacgcg
atggtggtggtggaaggggaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
atcaagcgcgtgatgagcatggaagatgctcgcaccaacctggccgaaagcctgcgcctg
aaggtcaagaccgatgcgctcaaaggtgatcagctacgctggttgggtgacttgcttaaa
cgccaccgtggcgcctgcccggtgaccatggagtacaccggcaacgacgccaaggcgatg
ttgcagtttggcgagacgtggcgaattgaccccgccgatggcttgattcaagcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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