Pseudomonas sp. NC02: C0058_07790
Help
Entry
C0058_07790 CDS
T10251
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psnc Pseudomonas sp. NC02
Brite
Enzymes [BR:
psnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C0058_07790 (hrpA)
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C0058_07790 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
AUO21897
LinkDB
All DBs
Position
1662323..1666234
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDQLLKNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVTRMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLI
GHTQPRRIAARSVASRVAEELATPLGSLVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAFERSERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPMGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTEEGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIIVGRRPVHYGPIDPVTSRELFIREGLVRGEIQSRARCLTANQQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLALALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQNIAGLSMTVYPALVEENGTVKEGRFSTAAEAEFQHRRALQRLLLQQL
AEPAKFLRGKLPGLTELGLMYRELGRIEALVEDILLASLDSCVLEGEASLPRDGAGLAAL
AERNRGSWTEHAERQARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSNLVYPGF
VRETPAQWFKELPRFLKAIELRLEKLPSQVQKDRVWSTELGGLWSQYQNRLNKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcgcccgctatcgaccaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccgcctgcggcggcagctgcttgagctgcgcaagaaacccgatgaggaa
aaacttgcgcagtgggtgacgcggatgcaggcctcctgcgcccaggtgacggcgcggcgc
gccagcctgccggtgattcgctatgacgacagcctgccgatcgccgccaagcgtgacgag
atcaaggaagcgttgctcaagcatcaggtgctgatcattgccggtgagaccggttcgggt
aaaaccacccagttgccgaaaatctgcctggaaatcggccgcggccaatacggcctgatc
ggccacacccagccgcggcggattgcggcgcgcagcgtggcgagccgggtcgcggaagag
ttggcgacgccgctgggttccctggtgggttatcaggtgcggtttgaagaccagagtgat
tccaacaccctgatcaagctgatgaccgacggtatcctgctggccgaaacccagaacgac
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctgggttatctgaaaaccctgctgccgcgtcgcccggacctcaaggtc
atcatcacctcggccaccatcgacctggagcgcttttccaagcacttcgacgatgcgccg
attgtcgaggtgtcgggccgcaccttcccggtggagacctggtaccgcccgctgaccctg
gagcaggacgaggagggcaaccgcgtcgaggacgacctgaccgtcgaccaggcgattctc
gccaccctcgatgagatcgccgccttcgagcgcagcgagcgcaagagccccggcgatgtg
ctggtgttcctgcccggcgagcgcgagattcgcgacgccgccgacatgctgcgcaaggcc
cagctcaagcacactgaaatcctgccgctgtatgcgcgcctgtcgccggcggagcagcag
cggatcttccagtcgcacccgggccggcgtgtggtgctggcgaccaacgtcgcggaaacc
tcgctgaccgtgccaggcattcgttatgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgggccaaggtgcagcgactgccgatcgaggcgatttcccaggccagtgcc
aaccagcgtaaaggccggtgcgggcgggtcgaacccggtatctgcgtgcgcttgtacagc
gaagaggattttatcgggcgcccggaatttaccgaccccgagattcttcgcacaaacctc
gcggccgtaatcctgcagatgctgcacctgcgcctgggcgagatcaccgatttcccgttt
atcgagccgccggacggcaaggccatcagcgacggtttcaacctgctgcaagagttgtcc
gccgttgaccgcaacagccagctgacaccgatgggccgccagttggcgcgtctgccggtg
gacccacgcatgggccgcatgttgctggaggcggccaagcttggcagcttgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcgtccgccggagcgccag
caagccgccgaccaggctcacgcacaatggaaggacgcggattcggacttcgccgggttg
gtgaacctgtggcgtggttttgaagagcagcgccaggaattgaccgccagcccgctgcgc
aattggtgccgcaagaatttcctgaactacctgcgcctgcgggagtggcgtgactcccac
cgccagttgagcctgatctgtcgcgacatgcagttgaccgtcaacaaagaaccggcggac
ttccccaaactgcacaaggcggtgctgtccggcctgctcagccagattggccagaagacc
gaagagggcgattacctcggcgcgcgtcagcggcgtttctggattcacccgtcgtcgggt
attggcaagaagcgtccgcaatggctgatgaccgccgagctggtggaaaccaccaagctg
tacgcgcggatggtggccaagatcgacgccgactggatcgagccgttggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggaaaagaagcgcggccaggtggtggcgttt
gagcagatcaccctgttcgggttgatcatcgtcgggcgccggccggtgcattacgggccg
attgatccggtgacgtctcgcgagctgtttatccgcgaaggcctggtgcgcggcgagatc
cagtcccgggcccgctgcctgacggccaaccagcaattgttggagcagctcgacgaactg
gaagccaaggcccgccggcgcgatatcctggcggacgaggaaacgctgtacgccttctac
gatgcgcgcctgccggcggagattcaccagaccgcgaccttcgacagttggtacaaggtc
aacagccagaaagacccgcagctgttgatcatgcgcgaagaagacgtgctggcccgcgag
gccagcgaagtcaccgccgcccattaccccgacaccttgcacctgggcgacctggcgctg
gccttgagttatcacttcgaacccaaccatccacgggacggtgtgaccctgcgcgtaccg
gcgccgttgttgccggccttgccgcccgagcgcctggaatggctggtgccgggtgtgatc
gaggccaagtgcattgccctggtgcgcaacttgcccaaggccctgcgcaagaacttcgtg
ccggtgccggatttcgtcaaggcggcgttgcaacgtatcgagtttggccaaggctcgttg
cctcaggccttggggcgcgagttgctgcgcatgaccggggcacgggtcagcgatgaagcc
tgggccgaggctgcgcagcaggtggagagccacctgaagatgaacctggaagtggtcgac
ggccagggcaagttcctcggtgaaggccgcgacctggccgagttgaccgcgcgtttcgcc
gaggccagccaagctgcgttggcggtgccgcagactgcgaagagccagcagccggtggag
gccaaggtgttcgcggcggtggccgagaaaacccagcaaaacatagccgggctttcgatg
acggtgtatccggccttggtcgaagaaaacggcacggtcaaggaagggcgtttctctacc
gctgccgaggctgagttccagcaccgtcgagccttgcagcgcctgctgctgcaacaactg
gccgagccggcaaagttcctgcggggcaaattgccgggcctgaccgagttggggttgatg
taccgcgagctggggcgtatcgaagccctggtggaagacattctgttggccagcctcgac
agttgcgtgctggaaggcgaagccagcctgccgcgggacggcgccggcctggccgccctg
gccgagcgcaaccgtggcagttggaccgagcacgccgagcgccaggcgcgcctgaccctc
gaaattttgaaactgtggcatggcctgcaaaaacgcttcaagggcaagattgacctggcc
caggcggtggcgctgaatgatatcaagcagcaactgagcaatctggtgtatcccggtttc
gtacgggaaaccccggcgcaatggttcaaggaactgccgcgcttcctcaaggccatcgag
ctgcgcctggagaaattgccaagccaggtgcagaaggaccgggtctggagtaccgagttg
ggcggcttgtggagccagtatcagaaccgcctgaacaaacacgcccaggaaggcaagcgc
gaccctcagctggagctgtatcgctggtggctggaggaataccgggtttcgctgtttgcc
cagcagttgggcaccaaggtaccgatttccgacaagcgcctgagcaagcaatggagcctg
gtcgaagcgtga
DBGET
integrated database retrieval system
