Pseudomonas sp. NC02: C0058_07970
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Entry
C0058_07970 CDS
T10251
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psnc Pseudomonas sp. NC02
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psnc03009
]
C0058_07970
Enzymes [BR:
psnc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C0058_07970
Ribosome biogenesis [BR:
psnc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C0058_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRAM
PCMT
MTS
RrnaAD
Methyltr_RsmB-F
Methyltransf_11
Methyltransf_23
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_4
Ubie_methyltran
DREV
TPMT
Motif
Other DBs
NCBI-ProteinID:
AUO21930
LinkDB
All DBs
Position
1701678..1703030
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AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQIPVGKKQRLTIERLANDGRGIVFFEGRTWFVVGALAGEEV
EARVLGAHGKVVEARTERVFTASELRRPAPCVHAGRCGGCSLQHLPHDEQLALKQRMLAE
QLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKKLEVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPNMLRRLSKPQALGHVELFSGSSIAVLLRHMAPLSEADLTILQEFCT
FHEAQLWLHGEGQPQPVEPGQALGYRLEPWDLQLAYRPGDFVQVNAGVNQAMVAQALDWL
APKPDERVLDLFCGLGNFALPLARQVREVVAVEGVQAMVDRAAQNAVSNNLHNVQVFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLATLGADRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccaaccgacgggcggcagccgggccccacag
attcccgtaggcaagaagcagcgcctgaccatcgagcgcctggccaacgacggccgcggc
attgtgttctttgaaggccgcacctggtttgtcgtgggtgcgctggccggtgaagaggtg
gaagcgcgggtgttgggcgcccacggcaaagtggtcgaggcgcgcaccgagcgcgtattt
accgccagcgaactgcgccgtccggcaccctgtgtgcacgccggccgctgtggcggttgc
agcctgcaacacttgccccatgacgaacaactcgccctgaaacagcgcatgctcgccgag
caattatcccgtgtggcaggtgtcgaaccccaggagtgggccgcgcctttgagcgggccg
gaattcggctatcgtcgccgcgcccgcgtggccgtgcgctgggatgccaaggcgaagaaa
cttgaagtcggctttcgtgccgtggccagccaggacatcgtcgccattgacgattgcccg
gtgctggtacaggccttgcaaccgatcatgcagcgtttgcccaacatgctgcggcgcttg
agcaagcctcaggcgttggggcatgtggaattattcagtggttcgtcgattgccgtgttg
ttgcgacacatggcgcccttgtccgaagcggacctgacgatcctgcaggaattttgcacg
ttccatgaagcccaactgtggctgcatggcgagggccagccgcaaccggtcgaaccaggc
caggccttgggctatcgtctggaaccgtgggatttgcagttggcgtaccgcccgggagac
tttgtgcaggtcaacgccggggtcaaccaggcgatggtcgcccaggcgctggattggctg
gcgccgaagcccgacgagcgggtgctggatttgttttgtggcttgggcaacttcgccttg
ccgctggcccgccaagtgcgggaagtggtggcggtggaaggggtgcaggccatggtggac
cgggcggcacagaatgccgtcagcaataatttgcataatgttcaggtttttcaggccgat
ttgtcccagcctttgaccgacgcggaatgggccaaacagggcttttctgcggtactcttg
gacccaccccgcgatggtgccctggaggttgtgcgcaagctcgctaccctgggggctgat
cgcctggtgtatgtgtcctgcaatccggcaacgctggcgcgggacacggtcgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgacatgtttccccagacggcccat
gtcgaggccatggcgttatttgaagcgggctag
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