Pseudomonas sp. NC02: C0058_09600
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Entry
C0058_09600 CDS
T10251
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0058_09600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psnc03019
]
C0058_09600
03009 Ribosome biogenesis [BR:
psnc03009
]
C0058_09600
Enzymes [BR:
psnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0058_09600
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0058_09600
Ribosome biogenesis [BR:
psnc03009
]
Prokaryotic type
rRNA helicases
C0058_09600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
AUO22235
LinkDB
All DBs
Position
2057173..2058846
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaagacatgattggccaagcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgccaatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaacggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtgctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggcactgccagcaacc
cgtcagaccgtactgttctcggctaccctgccacagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgctggt
cgcgaaggtcgtgcattgttgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccactagtggctgatgctgaatcg
acccacggcgacctgctggaccgcctgactgccgatatcggttgcaccccgcgtgccctg
gctgcagccctgctgcgcaaggcgaccaacggtcaggccctgaccctggctgccatcgag
aaagaacgtccactggtgccgaacaacgctccgcgcggtgatcgtccagagcgtactggc
gaccgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggctgaaggccgt
gctcgctgccgtaccgcgctgggcgcgcgtgatggcatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagcaatcggtcgcatccaggtgcgtgac
agcttctccctggtggagctgccggaagatggcctggagaaactcctgaccaagctgaag
gacacccgcgttgccggtaagcagttgaagctgcgtcgctaccgcgaagattga
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