Pseudomonas sp. NC02: C0058_19080
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Entry
C0058_19080 CDS
T10251
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02025
Biofilm formation - Pseudomonas aeruginosa
psnc03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
C0058_19080 (icmF)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
C0058_19080 (icmF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psnc02044
]
C0058_19080 (icmF)
Secretion system [BR:
psnc02044
]
Type VI secretion system
Imp/Vas secretion system core components
C0058_19080 (icmF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related
IcmF-related_N
IcmF_C
IcmF_helical
DUF4131
Motif
Other DBs
NCBI-ProteinID:
AUO23986
LinkDB
All DBs
Position
complement(4060790..4064176)
Genome browser
AA seq
1128 aa
AA seq
DB search
MNAFFRSAGAVLGRVWVWSLLLVLAVAMAVWFFGPLLAVDDYRFWQAAASRLLTISGLFL
LWGLAMVYANWRSMARQSTVDDGEPRPRKGQVENEQRHLRGRFKDALYTLKHSRIYGERS
PRWRNALPWYLLIGKEGSGKSRMLAASGLQLLQDQGASVATQGGATRDCNWHFAEDGVLL
DVAGRYLTQPDSQVDGAGWSTLLELLKVRRRTRPLNGVVVALSTDTLLHGSERELENEAR
AVQSRLLEIRQTLHVEVPIYLVVTQADRLPGFAEFFERPLGEGSDAVLGESIVPGKAGIG
IAQVRQAFEALLQRLSGELVQRLHQERNSDLRGRMLDFPHQAARIGERLSLYIDVAFCGP
RYQHTNGFRGFYLTSADGGPQALEPRAYFIQGLFSRVILAQADLADLDSQERRRIRQHQG
GLALGALVVVVAAGLLWTHSYSSNHQRLEQLQALARQPAPVQPGSDATQALLPLLDSRLA
ATRIFPLPGEARLVERMGLYQGSISRPVLEQAYERALGRLLLSQVSEMLQEQVRGSLEDR
ERLLDNLRAYLMLNLRERRDVGWLRERVAGHWSVRFAGEPSVQNRLNEHFARLLEQPFVQ
PLDDELVARARHVLRGESLVDVVYRVLREQARGLEPLRLAHGRVFEGGERSIPGFYTRTY
QRHFEAQGARLVNTIVQDNWVLGEGADLSAMDLQRLMVELEQRYFSEYADAWSEALGQVG
LRETENSRQGAEQLASLTSAQSPLLQLLQQVRDHTRLPSASERLDELAAKLPGPAAERLP
TAAGLVNALPDSARRAMQRRFEPLHQLLDNHENPGVELTGVLQALNDLHLQLASLNREGA
PEPVAFEMVKRRIQGQQDALSNLRNVAARLPLPLAGWFESLADEHWRRLLDQAYRHVNQR
YQSEVYGFYSRAIKLRFPFNAHASSDVSLNDFQEFFKPEGIMARFFDSYLKPFVSGDSGR
YRLRSLDGRSLPMSRALLDQQAKVQVIRRGFFADEPGDLQVRFTLAPYSLDPSVSRAVLR
LGGQQMEYRHGPIVPMAMQWPAEAENGRSSLVLERGSERALGLEKNTGAWSLFRLFDLMQ
NEPSSGQDELILKADLAGLRANYLLTSRRTPNPFQMAQWRTFRLPEQL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcattcttcaggagcgcgggcgccgtgctgggcagggtttgggtctggagcctg
ctgctggtgctcgcggtcgcaatggccgtgtggttcttcgggccactgctggctgtcgac
gactatcgattctggcaagcggcggcatcgcgcttgctgacaatcagcgggctgtttttg
ttgtggggcctggcgatggtgtatgccaattggcgcagtatggctcggcaatcaaccgtc
gatgacggcgaaccacgcccgcgcaaaggccaggttgaaaacgagcagcggcacctgcgc
ggtcgcttcaaggacgctttgtacaccctgaaacactcccggatttatggtgagcgcagc
ccgcgttggcgtaatgcattgccctggtatttgctgatcggcaaggaaggcagtggcaag
tcccggatgttggccgccagtggcttgcagttgctccaggatcagggcgcgtcggtagcg
acgcagggcggtgccacgcgggactgtaactggcatttcgccgaggacggcgtgttgctc
gacgtcgccggccgctaccttacccagcctgacagccaggtcgatggcgcgggttggtcg
acgctgctggagctgctcaaggtgcggcgccggacacgcccgctcaacggtgtggtggtg
gcgctgtccacggacacattactccatggcagcgagcgtgagctggagaatgaggcgcgg
gcagtccagagtcggttgctggagatccgccagacgttgcatgtggaggtgccgatctac
ctggtggtgacccaggccgaccgcctgccggggtttgcggagttcttcgagcggccgttg
ggcgaaggcagtgatgcggtgttgggcgaatctatcgtcccaggcaaagcgggtattggc
attgcccaggtacgacaggcgtttgaagcactgctgcagcgcttgagcggtgagcttgtg
cagcgcctgcaccaggaacgcaacagtgatctgcgcggacggatgctcgacttcccccat
caggcggcccggattggcgagcgcctgagcctctatatcgacgttgctttttgcggcccg
cgttatcagcacaccaacggctttcgtggtttctacttgaccagcgccgacggtggccca
caggcacttgaaccacgtgcgtactttatccagggcttgttcagccgggtgattctggcg
caagccgacctggcggacctcgatagccaggagcgccgtcgaatccgccagcaccagggg
gggctggccctgggcgcgctagtggtcgtcgtggcggcgggcttgctgtggacccacagt
tactcctccaatcatcaacgtctggagcaactgcaggcgctggcacgacagcccgcaccc
gtgcagcctgggtcagacgctacccaggcactcctgccgctgctggacagccgcctggcg
gccacgcggattttccccttgccgggcgaagccaggctggttgagcggatggggttgtat
cagggcagtatcagccgtccggtgctggagcaggcctacgagcgtgccttggggcggctg
ttgctgtcccaggtcagcgagatgctacaggaacaggttcgcggcagcctggaagatcgt
gaacggctgctggataacctccgggcgtacctgatgctcaacctgcgggagcggcgggat
gtcggctggctgcgtgagcgggtggcggggcattggtctgtacggtttgccggtgagccc
tccgtgcaaaaccggttgaatgaacatttcgcgcgcttgcttgagcagccgttcgtgcag
ccgctcgatgacgagctggtggcccgcgcgcgccacgtgttgcgcggcgaatcgctggtt
gacgtggtgtaccgggtgctgcgcgaacaagctcgcggccttgaaccgttgcgccttgca
cacgggcgggtgtttgaggggggcgagcgttccattccggggttttatacccgcacgtac
cagcggcattttgaagcgcagggcgcgcggctggtgaacaccatcgtccaggacaactgg
gtgctgggagagggcgccgacctgagcgccatggatttgcaacggttgatggtggagctt
gaacaacgctacttcagcgagtatgccgatgcctggagcgaggcgcttgggcaggttggc
ctgcgtgaaactgaaaactccaggcaaggcgccgaacagctcgccagcttgacgtcggcc
cagtcgccgttgttgcagttgttgcagcaggttcgtgaccacacgcgcctgccgtcggcc
agtgagcgcctcgacgagctggctgccaagctgcctggacctgcggcagagcggttgccg
accgccgccgggctggtcaatgccttgcccgacagcgcacggcgagccatgcagcgccgc
ttcgagcccttgcaccagttgctggacaaccatgagaacccgggagtcgagttgaccggc
gtgttacaggcgctcaacgacttgcacctgcagttggcgagcttgaatcgcgaaggcgcg
ccggagccggtcgcgttcgagatggtcaagcggcggatccaggggcaacaggatgcgctg
agtaacctgcgcaacgtggccgcgcgtttgccgctgccgctggcgggctggttcgaaagc
ctggccgacgagcattggcgccgcctgctcgaccaggcttatcggcatgtgaaccagcgt
tatcagagcgaggtatatggtttctacagcagggcgatcaagctgcgtttcccgttcaat
gcccacgccagcagcgacgtttccctcaacgacttccaggagtttttcaagcctgagggg
atcatggcgcgattctttgacagctatctgaagcctttcgtcagcggtgattccgggcgc
tacaggctgcgtagcctggatgggcgcagcttgccgatgtctcgggcgttgctcgaccag
caggcgaaggtgcaggtgatcaggcgcggtttttttgcggatgagccgggggacttgcag
gttcgtttcacgctcgcgccctatagcctggacccgtcggtgagtcgcgcggtcttgcgt
ttgggtggtcagcagatggagtaccggcacgggccgattgtccccatggcgatgcaatgg
ccagccgaggctgagaatggtcgcagcagcctggtgctggagcggggcagcgagcgggcg
ttggggctcgaaaaaaataccggggcctggtccctgtttcgcttgttcgacttgatgcag
aacgaaccctccagcgggcaggatgagctgatcctcaaggctgacctggcaggcttgcgc
gccaactacctgctgaccagccgacgcacccccaatccatttcagatggcgcagtggcga
acttttcgcctgccggagcagttgtga
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