Pseudomonas sp. NC02: C0058_20030
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Entry
C0058_20030 CDS
T10251
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0058_20030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnc03021
]
C0058_20030
Transcription machinery [BR:
psnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0058_20030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_11
GerE
PhyR_sigma-like
HTH_Mga
HTH_24
HTH_28
HTH_Tnp_ISL3
HTH_17
HTH_20
TnsD
HTH_40
HTH_Tnp_4
HTH_VMAP-M9
DUF8612
HTH_69
HTH_IclR
HTH_31
Sigma54_DBD
Dimerisation2-like_dom
HTH_10
MarR
DUF1804
PCI
HTH_5
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AUO24168
LinkDB
All DBs
Position
complement(4252980..4253525)
Genome browser
AA seq
181 aa
AA seq
DB search
MHDFPVADGDIARRQQTITTLYSDHHSWLHGWLRKKLGCSQHAADLAHDAFIRILLLADP
HTIKEPRAFLATTAGRLMIDGARRRRIEKAYMEALAIQSEDAGMPDPAAIHVALQALERI
AEMLIGLPAKAREAFLLSRLDGLTYSEIAEQLQVSSSTVKNYISSALVHCYHTLHGADPL
S
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgcatgactttcctgtagctgatggtgatatagcccgtcgccagcagaccatcaccacc
ctctacagcgaccatcattcctggttgcacggttggctgcgcaagaaactcggctgctcg
caacatgccgccgacctggcccacgacgcgtttatccgcatcctgctgctggccgacccc
cataccatcaaggaaccccgcgccttcctggccaccacggcggggcgcttgatgatcgat
ggcgcgcgtcggcggcgcatcgaaaaggcctacatggaagccctggcgatccagagcgaa
gatgccggcatgccggacccggcggcgattcatgtggcactgcaggccctggaacgcatt
gccgaaatgctcatcggcctgcccgccaaggcccgcgaggcattcctgctcagtcgcctc
gacgggctgacctacagcgaaatcgccgaacaactgcaggtgtcttccagcaccgtgaag
aactacatctccagtgcgttggtgcattgctatcacaccctgcacggggcggacccgctg
tcgtga
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