KEGG   Pseudomonas sp. NC02: C0058_20030
Entry
C0058_20030       CDS       T10251                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C0058_20030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psnc03021]
    C0058_20030
Transcription machinery [BR:psnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C0058_20030
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_11 GerE PhyR_sigma-like HTH_Mga HTH_24 HTH_28 HTH_Tnp_ISL3 HTH_17 HTH_20 TnsD HTH_40 HTH_Tnp_4 HTH_VMAP-M9 DUF8612 HTH_69 HTH_IclR HTH_31 Sigma54_DBD Dimerisation2-like_dom HTH_10 MarR DUF1804 PCI HTH_5 Phage_terminase
Other DBs
NCBI-ProteinID: AUO24168
LinkDB
Position
complement(4252980..4253525)
AA seq 181 aa
MHDFPVADGDIARRQQTITTLYSDHHSWLHGWLRKKLGCSQHAADLAHDAFIRILLLADP
HTIKEPRAFLATTAGRLMIDGARRRRIEKAYMEALAIQSEDAGMPDPAAIHVALQALERI
AEMLIGLPAKAREAFLLSRLDGLTYSEIAEQLQVSSSTVKNYISSALVHCYHTLHGADPL
S
NT seq 546 nt   +upstreamnt  +downstreamnt
atgcatgactttcctgtagctgatggtgatatagcccgtcgccagcagaccatcaccacc
ctctacagcgaccatcattcctggttgcacggttggctgcgcaagaaactcggctgctcg
caacatgccgccgacctggcccacgacgcgtttatccgcatcctgctgctggccgacccc
cataccatcaaggaaccccgcgccttcctggccaccacggcggggcgcttgatgatcgat
ggcgcgcgtcggcggcgcatcgaaaaggcctacatggaagccctggcgatccagagcgaa
gatgccggcatgccggacccggcggcgattcatgtggcactgcaggccctggaacgcatt
gccgaaatgctcatcggcctgcccgccaaggcccgcgaggcattcctgctcagtcgcctc
gacgggctgacctacagcgaaatcgccgaacaactgcaggtgtcttccagcaccgtgaag
aactacatctccagtgcgttggtgcattgctatcacaccctgcacggggcggacccgctg
tcgtga

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