Pseudomonas sp. NC02: C0058_22785
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Entry
C0058_22785 CDS
T10251
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0058_22785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnc03021
]
C0058_22785
Transcription machinery [BR:
psnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0058_22785
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
HTH_28
HTH_11
HTH_40
DUF722
Phage_antitermQ
HTH_Tnp_ISL3
MEIOC
HTH_29
HTH_24
Phage_NinH
Terminase_5
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AUO24659
LinkDB
All DBs
Position
4903973..4904491
Genome browser
AA seq
172 aa
AA seq
DB search
MSVGEPPFQREITELYSEHHGWLFTWLRRKLGCTHNAADVAQDTFARILHARESVTAIRE
PRAYLSTTARRLIIDQARRKQIEHAYLQELMLTVETLEGFQSPEQIHTTLEALEHIAFML
EGMHDNMRQAFVLYYLEDLTQQQIARQLKLSERTVRKYLIQALLHCSHSVDI
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaggtgaaccgccgttccaacgggagattaccgaactgtacagcgagcatcac
ggctggctgttcacttggttgcgccgaaaactgggctgtacccataacgccgccgacgtg
gcgcaggacaccttcgcgcggattctgcacgcccgcgagtcggtgaccgccatccgcgaa
ccccgcgcctatttaagtaccaccgccaggcggctgatcatcgaccaggcacggcgcaag
cagattgagcacgcctaccttcaggaattgatgctgacggtggaaaccctggaaggtttc
cagtcgcccgaacagatccacaccaccctggaagccctcgagcacattgccttcatgctg
gaaggcatgcacgacaacatgcgccaggcgtttgtgctgtattacctcgaagacctgacc
cagcagcaaatcgcccgacaactgaagctgtcggaacgtacggtacgcaaatacctgatc
caggccctgctgcattgcagccacagcgtggacatctga
DBGET
integrated database retrieval system