KEGG   Pseudomonas sp. NC02: C0058_22785
Entry
C0058_22785       CDS       T10251                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C0058_22785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psnc03021]
    C0058_22785
Transcription machinery [BR:psnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C0058_22785
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_23 GerE HTH_28 HTH_11 HTH_40 DUF722 Phage_antitermQ HTH_Tnp_ISL3 MEIOC HTH_29 HTH_24 Phage_NinH Terminase_5 HTH_17
Other DBs
NCBI-ProteinID: AUO24659
LinkDB
Position
4903973..4904491
AA seq 172 aa
MSVGEPPFQREITELYSEHHGWLFTWLRRKLGCTHNAADVAQDTFARILHARESVTAIRE
PRAYLSTTARRLIIDQARRKQIEHAYLQELMLTVETLEGFQSPEQIHTTLEALEHIAFML
EGMHDNMRQAFVLYYLEDLTQQQIARQLKLSERTVRKYLIQALLHCSHSVDI
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtctgtaggtgaaccgccgttccaacgggagattaccgaactgtacagcgagcatcac
ggctggctgttcacttggttgcgccgaaaactgggctgtacccataacgccgccgacgtg
gcgcaggacaccttcgcgcggattctgcacgcccgcgagtcggtgaccgccatccgcgaa
ccccgcgcctatttaagtaccaccgccaggcggctgatcatcgaccaggcacggcgcaag
cagattgagcacgcctaccttcaggaattgatgctgacggtggaaaccctggaaggtttc
cagtcgcccgaacagatccacaccaccctggaagccctcgagcacattgccttcatgctg
gaaggcatgcacgacaacatgcgccaggcgtttgtgctgtattacctcgaagacctgacc
cagcagcaaatcgcccgacaactgaagctgtcggaacgtacggtacgcaaatacctgatc
caggccctgctgcattgcagccacagcgtggacatctga

DBGET integrated database retrieval system