Pseudomonas sp. NC02: C0058_23820
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Entry
C0058_23820 CDS
T10251
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0058_23820 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psnc03019
]
C0058_23820 (recQ)
03400 DNA repair and recombination proteins [BR:
psnc03400
]
C0058_23820 (recQ)
Enzymes [BR:
psnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0058_23820 (recQ)
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0058_23820 (recQ)
DNA repair and recombination proteins [BR:
psnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0058_23820 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HTH_40
GerE
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AUO24848
LinkDB
All DBs
Position
complement(5114161..5116287)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSDRRSDAGIVYCLSRKK
VDEVAAFLSEQGYPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPKPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKIRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDLE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRFEEREQWEALRALRK
KLAQEHSVPPYVIFPDSTLLEMLRDHPTTLGEMARVSGVGARKLERYGQAFLEVLGGQVE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVSEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggctcaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccaacggcggcgatgccctggtgctgatgcct
accggcggcggcaagtcgctgtgcttccaggtaccggcactcctgcgggaagggcttgcg
gtggtggtgtcgccgttgatcgccctgatggacgaccaggtggccacccttgaagagctc
ggcgtggcggccgcttcgctgaactccaccctcagcgccgaacagcagcgtgacctcgcc
gcccggatcaagcgcggcgaagtgaagatgctttacctcgcccccgagcgcctggtgcag
ccacggatgctggcgttcctgcagagcctggaaatcgccctgttcgccatcgacgaagcc
cactgtgtgtcccaatggggccacgatttccgtcgtgaatacctgcagctgggccaactg
gcggaactgttccccaacgtcccgcgcatcgccctgaccgccaccgccgacaaacggacc
cgcgaagaaatcgtcgagcgcctgcacctgcagaacgccgagcgcttcctctcgagcttc
gaccggccgaatatcttttaccgcattgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctctccgatcggcgcagcgacgccggcattgtctattgcctgtcgcgcaagaag
gtcgatgaggtcgccgcattcctcagtgaacaaggctacccggcactgccgtatcacgcg
gggttgcccaacgaactgcgggcctaccaccagaagcgcttcctcaacgaggaaggcctg
atcatggtcgccaccatcgcgttcggcatgggcatcgacaaatccaacgtgcgcttcgtg
gcccatatggatctgcccaaatccctcgaggcgtactaccaggaaaccgggcgtgccggc
cgtgacggcctgccggcggatgcgtggatggtctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgaaggcgacgagcgccacaagcgcctggaacagcacaag
ctcgacgcgatgctgtcgctgtgtgaagaaacccgctgccgtcgccagaccttgctcgcc
tacttcgacgaagacatgcccaagccctgcggccactgcgacaactgcgtggacggcgtg
cagacctgggacgccaccgagccggcgcgccaggcgttgtcggcgatctaccgcaccggc
cagcgctatggcgtcggccacctggtggacgtgttgctgggcaaggacaatgaaaagatt
cgcagcttcggccacgaaaaactctcggtctacggtgtgggcaaggcccgcgccgaaggc
gagtggcgctcgctgttccggcagatggtcgcccgtggcctggtggacatcgacctggaa
ggctacggcggcctgcgcctgaacgacagttgccggccgctgctcaagggcgaagtcagc
ctggagctgcgccgcgacctcaagccgcaaaccaccgccaagagcagcaccagccaggcc
agccaactggtgcgtttcgaagagcgcgaacagtgggaagccctgcgcgcgctgcgtaag
aagttggcgcaggaacacagcgtgccgccttacgtcatcttcccggactccaccttgctg
gaaatgctccgcgaccatcccactaccctcggcgagatggccagggtcagcggcgtcggt
gcgcgcaagctggagcgttatggccaggccttcctcgaagtgctcggcggccaggtcgag
gcgccgaaagaggtcgccgacatccgccacgagttgatcagcctcgcccgtgccggcatg
accccgatccagattgccgggcagctgcagtgctcggaaaagaacgtctacaccttgctc
gccgagtccattggcaagcagcagttgtcgttggagcaggcccttgatctgccggaagat
ttgctcggtgaaatccaggatgcattcctggatggagaaggcgaattgccacccgtttcc
gagattgcgccgctgtttaccggccgcgttcccgagggcgttttgtactgcgtaagggcc
gctttgcagtcggaattcgagatttga
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