Pseudomonas sp. NC02: C0058_24200
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Entry
C0058_24200 CDS
T10251
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0058_24200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psnc03019
]
C0058_24200
03009 Ribosome biogenesis [BR:
psnc03009
]
C0058_24200
Enzymes [BR:
psnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C0058_24200
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C0058_24200
Ribosome biogenesis [BR:
psnc03009
]
Prokaryotic type
rRNA processing factors
C0058_24200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AUO24922
LinkDB
All DBs
Position
5182404..5185649
Genome browser
AA seq
1081 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHVNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPVEAA
APVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPVTERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREERAPREERQPREAREETPTVAREERAPREERAPRAPRAPR
EDRKPRGEREERVRELREPLDAAPAVAAAAATTATAEERPARQPREERAPRPPREERQPR
AEQAAPAGEEEELLSNEDQQQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNEIEG
SEETGEANAAATGEPTGAELAAGLAVTAAVASSVISAPAEAQANEQAEAATAAIQETPAV
ETPAVEAPVVEATTPVEAPVVPEVEVAPARQVREVREPKPEAEVVAEPAAVVEQQPVVEA
AVEAPVAEPTPEVREVREEQTAFQWTAEPAPVVEAVEAPAPAPVVEEAPAPVAEVVVAPE
PVAVVAERAPVVEAPVVAEVAAPVVEAAPASALTENGRAPNDPREVRRRRKEAEAAAAAA
KAAAEAAPAVAEVAEAAPAPVTEAVVEHSAPAIDENVRSVEEVVEHHPKAQEEEHEPKPL
V
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccaacgc
ctctacgacctggacatcgagtccggtgcacgcgagcaaaagaaggccaacatctataaa
ggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaatcccctgaa
ggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcattgttcaggtagaa
aaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctggctggccgc
tatctggtcctgatgccgaacaacccgcgtgccggcggtatctcccgtcgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcttgatcgctccggccgacatgggc
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcagctgtggaccgctatcaaggaagcgtccctggatcgttccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgaaaccgctttccagcgcgtcgtcgaactgcct
tccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgtgccaccaagggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgaccccagccaagaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagctgaccgtgcccgcgtacaggtcggccgcatttcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccatccctgggtgaaagcagcggcatcgtctgcccgcgt
tgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgcccaggtgccgatcccg
gtcgctgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgcatcgtcatcctgccgaacgatcacctcgagacaccgcacttcgaagttcag
cgcctgcgtgatgacagcccggaagcccacgtcaaccagtccagctacgaaatcgctgct
gccgctgccgaagtggaagaagtccagccagccgctgcgacccgcaccctggttcgccag
gaagccgccgtcaagaccgcgccagcccgtgccaacgcaccggttccggtcgaagctgcc
gcgccggttgccgcaccagctgccctgcctgagccaagcctgttcaaaggcctggtgaag
tcgctggtcagcctgttcgccaccaaggaagagccagtggctccagttgtggtcgagaag
cctgtgactgaacgccctgcacgcaatgaagagcgtcgcaacggtcgccagcagagccgc
aatcgcaacggtcgccgtgacgaagagcgcaagcctcgtgaagaacgtgcaccccgcgaa
gaacgcgccccacgtgaagagcgccaaccgcgcgaagcccgtgaagaaacaccaaccgta
gcccgtgaagagcgtgcaccacgcgaagaacgtgcaccgcgtgctccacgcgctccacgt
gaagaccgcaagccacgtggcgagcgtgaagaacgcgtgcgtgaattgcgcgagccgctg
gatgccgctccagccgtagccgctgctgctgccactactgccactgctgaagagcgtcca
gctcgtcagccgcgtgaagaacgtgcgccacgccctcctcgtgaagagcgtcaaccacgt
gccgagcaagcggctcccgccggtgaagaagaagagctgctgtccaacgaagaccagcaa
caggaagacggccaggacaacgccgaaggcgatcgtccacgccgccgctcccgtggccag
cgtcgtcgcagcaaccgtcgtgagcgtcaacgtgatgccaacggcaacgaaatcgaaggt
tcggaagagaccggcgaagccaacgcagccgctaccggcgaaccgactggcgccgaactg
gctgccggcctggccgttaccgcggctgtcgccagctcggtcatcagcgcacctgctgaa
gcccaggccaacgagcaagctgaagcagccaccgctgccatccaggaaacccctgctgta
gagacgccagccgtcgaagcacctgtggttgaagcgacgacgccagtcgaagccccggtt
gttccggaagtggaagtagcgccagctcgtcaagttcgtgaagttcgcgaacctaagcct
gaagctgaagtggttgccgagcctgccgctgttgttgaacaacagcccgtggttgaagcc
gccgttgaagcaccggttgccgagccaacccctgaagtgcgtgaagttcgcgaagaacag
accgccttccagtggactgccgaacctgccccagtggtcgaagcggttgaagcaccagcg
cctgctccagtggtcgaagaagctccagcgccagtcgctgaagtggtcgtcgcccctgaa
cctgtggccgtggttgccgagcgtgctccagtggttgaagcaccagtggttgccgaagtg
gcagccccggtggttgaagccgctccggccagcgccctgaccgaaaatggccgtgcgccg
aacgacccacgcgaagtgcgtcgtcgtcgcaaggaagctgaagcggctgccgctgctgcc
aaggccgctgccgaagccgctccagccgtcgctgaagttgccgaggcagcccctgctccg
gtcaccgaagccgtggttgagcacagtgcccctgccatcgacgagaacgtacgttccgtt
gaagaagtggtagagcaccaccctaaggcccaggaagaagagcacgagcctaaacccctc
gtctga
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