Pseudomonas sp. NC02: C0058_24995
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Entry
C0058_24995 CDS
T10251
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C0058_24995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnc03021
]
C0058_24995
Transcription machinery [BR:
psnc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0058_24995
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_31
GerE
HTH_3
HTH_24
HTH_28
HTH_10
Terminase_5
DUF3080
DUF6362
Xre-like-HTH
HTH_5
HTH_11
DUF2774
Motif
Other DBs
NCBI-ProteinID:
AUO25072
LinkDB
All DBs
Position
complement(5332802..5333311)
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AA seq
169 aa
AA seq
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MSGADTSHSDYVGGLFRSHYDWLCGRLHRHLDSRAHAEDIAADTFVQLLSSPGVAPIRQP
RALLTTIAQRLMYQLWRRRDLERAYLDALDQDETSPAPSPEDLAQMLEALQAIDQLLDGL
PAKVKATFLLSQLNGLTYPEIAAELGISQRSVSDYMTRAVNRCLRLCLE
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgccgacacttctcacagcgattacgtgggcggattgttccgcagtcattac
gactggctgtgcggccgtttgcaccgccatctcgattcccgtgcccacgccgaagacatc
gccgccgacaccttcgtccagctcctgagttccccgggcgtggcgccgatccgccagcca
cgcgccttgctcaccaccattgcccaacgcctgatgtaccagctgtggcgtcgccgtgac
ctggagcgcgcctacctcgacgccctcgaccaggacgaaacctcgcccgcgccatcccct
gaggatttggcgcagatgctcgaagccctgcaggccatcgaccagttgctcgacggcttg
ccggccaaggtcaaggcgacctttctgctgtcgcaactcaatggcctgacctacccggaa
atcgcggccgagctgggcatttcccaacgctcggtcagcgactacatgacccgtgccgtc
aaccgctgcctgcggctgtgcctggaatga
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integrated database retrieval system