KEGG   Pseudomonas sp. NC02: C0058_24995
Entry
C0058_24995       CDS       T10251                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnc  Pseudomonas sp. NC02
Pathway
psnc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psnc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    C0058_24995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psnc03021]
    C0058_24995
Transcription machinery [BR:psnc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C0058_24995
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_31 GerE HTH_3 HTH_24 HTH_28 HTH_10 Terminase_5 DUF3080 DUF6362 Xre-like-HTH HTH_5 HTH_11 DUF2774
Other DBs
NCBI-ProteinID: AUO25072
LinkDB
Position
complement(5332802..5333311)
AA seq 169 aa
MSGADTSHSDYVGGLFRSHYDWLCGRLHRHLDSRAHAEDIAADTFVQLLSSPGVAPIRQP
RALLTTIAQRLMYQLWRRRDLERAYLDALDQDETSPAPSPEDLAQMLEALQAIDQLLDGL
PAKVKATFLLSQLNGLTYPEIAAELGISQRSVSDYMTRAVNRCLRLCLE
NT seq 510 nt   +upstreamnt  +downstreamnt
atgtccggcgccgacacttctcacagcgattacgtgggcggattgttccgcagtcattac
gactggctgtgcggccgtttgcaccgccatctcgattcccgtgcccacgccgaagacatc
gccgccgacaccttcgtccagctcctgagttccccgggcgtggcgccgatccgccagcca
cgcgccttgctcaccaccattgcccaacgcctgatgtaccagctgtggcgtcgccgtgac
ctggagcgcgcctacctcgacgccctcgaccaggacgaaacctcgcccgcgccatcccct
gaggatttggcgcagatgctcgaagccctgcaggccatcgaccagttgctcgacggcttg
ccggccaaggtcaaggcgacctttctgctgtcgcaactcaatggcctgacctacccggaa
atcgcggccgagctgggcatttcccaacgctcggtcagcgactacatgacccgtgccgtc
aaccgctgcctgcggctgtgcctggaatga

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