Pseudomonas sp. NC02: C0058_30365
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Entry
C0058_30365 CDS
T10251
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0058_30365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psnc03019
]
C0058_30365
Enzymes [BR:
psnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0058_30365
Messenger RNA biogenesis [BR:
psnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0058_30365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AUO26066
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All DBs
Position
6442171..6444054
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AA seq
627 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPAAHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNNPRGPKGDGPNGGGGGG
GRKDKGKDKGGKDKAATNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD
DVDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGTPRTGGQPQGRQNGPRSSNGATTGT
PPAKRSGPRNGAPRDGQARREESRNRRPARDDQPRLSEPAVQNPRGGPAPKIIHKESKSD
RTLTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggccgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgcccttccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgccgcacaagtgcatgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgcggtgtcgacgtactggttgcatgcccgggtcgcttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcgcgc
ctgccggccaaacgccagaacctgctgttctcggccacgttctccaacgacatcaccgcg
ttggcgggcaagttgttgcacaaccccgagcgcattgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcagcgcgtattccgcctgccggccgcccacaagcgttcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgcgatccac
ggcaacaagagccagaatgcccgcaccaaagccctggccgacttcaaggccggtgaagtg
cgcatcctggtcgccaccgacatcgccgctcgcggcctggacatcgaccaactgccccac
gtggtcaacttcgagctgccaaacgtcgacgaagactacgtgcaccgtatcggccgtact
ggccgggccggtcgttcgggcgaggccatttccctggtcgcaccggacgaagaaaagctg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gactccagcgcggttgaggccgagaagcctgaagtgcgcgaacgtccggacgtgcgcaac
ccgcgcaacaacccacgcggtccgaagggcgatggcccgaacggcggcggcggtggtggc
ggtcgtaaagacaagggcaaggacaagggcggcaaggacaaggctgcgaccaatggccgt
ggcgaacgcccggcccgtgagcaaaagccccgtgaaggcaccccggcccgcgaacagcgc
cagccgagccagccgccacgtgctgctgccgaccgtgctccggacgagttcctggacgac
gacgtggacaacttcggtaaccgcgttgactacgtgccccaggccaagccggcccagggc
cgtggtcgtcgtccgggcgctccggcccagggcgcaggcgccggtactccgcgtaccggc
gggcagccacaaggtcgccagaacggtccgcgcagcagcaacggcgccaccaccggcacc
ccgcctgccaagcgcagcggcccgcgcaacggtgcaccgcgtgacggccaggcccgtcgc
gaagagtcgcgcaaccgtcgcccggcccgtgatgatcaacctcgcctgtcggagccagcg
gtgcaaaacccgcgcggcggcccggcaccgaagatcatccacaaagagtcgaaaagcgat
cgcacgctgacacctgagcagttggatcaactgccgggccgtccacgtggtgaaaaaccg
gcgttgctgacccgcaaccgctga
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