Pseudomonas sp. NC02: C0058_31870
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Entry
C0058_31870 CDS
T10251
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
psnc Pseudomonas sp. NC02
Pathway
psnc02025
Biofilm formation - Pseudomonas aeruginosa
psnc03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
psnc00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
C0058_31870 (icmF)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
C0058_31870 (icmF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psnc02044
]
C0058_31870 (icmF)
Secretion system [BR:
psnc02044
]
Type VI secretion system
Imp/Vas secretion system core components
C0058_31870 (icmF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
T7_gp14
Motif
Other DBs
NCBI-ProteinID:
AUO26352
LinkDB
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Position
complement(6742003..6745503)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKAFFSFVIRWVIPLLGLIALSLIIWFVGPLLDVLVPEGRRWALIILVFAVWIAYRVFRI
IQARRQAAEVMRSLAAETPPDPASVATAEELATLRQRMDEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSNSTVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGSDAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKNSDSP
LAHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQGFLEGVFKPN
AFEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQHLARQTGTGRSYFIEKLFTAV
AFAERGLVGVNPKVERRRKWIARGVLAATVALVLVVSTLWWVSYRANQAYIAQVDQKVAP
LGQTVQNLSPAQREVLAVLPLLNAVKNLAGDSPSWSEGLGLYQGDMLEAESASVYRKLLI
AVFAPRLVTRIEEQLHGGGNSDFLYEGLKAYLMLADSEHYDPDFIKAWIALDWDRNLPRD
LPADQRQALIGHLQALFERHPPSARLDPRLIDDLRRQLQQLPVAQRVYDRIKRQKLPEGV
PDFRINEAAGRDAALVFSRKSGKPLGEPLSGFFTAKGYRQGFLLTSLNQTGTLAEEQWVL
GREQADQQNVVSLAADVRRLYFQDYQRQWDALLADIDFVPITSVAQAADVLRVISGPTSP
LKKLLVAVSKETDLQAEERLLAAKGAPVEGGVDKLKERLGSLLGQDQPTANAPAASEDPV
TAHFAELNSIVSKNEGEPAAIDGLLADMNALYVQVSAMVGASGDALLGEAKNQAAAAATR
VSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSTQTWRWQPGAAQKLGIAPGVLQTFQ
RAATIRDAFFRAGGTQPIVRFELKPVAMDATITQFLLDLDGQQLSYDHGPSRPVAMQWPN
PGSIGVVRISIMPPSASGRSGVTLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASIS
YELRANSAFNPFKSRVLNGFSLPERL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagttttgtgattcgctgggtgatcccgctgctgggcctgatcgcc
ttgagcctgatcatctggtttgtgggcccgttgctcgatgtgctggtgccggaagggcgc
cgctgggcgctgatcatcctggtgttcgcggtgtggattgcctaccgcgtgttccggatt
atccaggcccggcgccaggctgccgaagtgatgcgcagcctcgcggcggaaaccccgcca
gaccccgccagcgtcgccaccgccgaagagctggcgaccctgcgccagcgcatggacgaa
gccctggccctgttgaaaaaggccaagctgggcggtgacgagcgccgcaacctgtatgag
ctgccgtggtatgtgatcatcggcccaccgggctcgggcaagaccaccgcgctggtcaat
tccgggctgcactttcccttggcggcgcagttgggtgccggtgcggtacggggcgtgggc
ggtacgcgcaattgcgattggtggtttaccgatcaggccgtattgctcgacaccgctggc
cgctacaccacccaggacagcaactccacggtggataaagccgcctggctgggctttctc
gacctgctgaaaaagcagcgttcccggcgcccgattgatggtgcgtttatcgccatcagc
ctctcggacctgctgctgggcagcgacgccgagcgtgccgcccatgccgccgcgatccgc
ctgcgtatccaggagctgtacacccaactgggcgtgcgcttcccgatctacctgatgctc
accaagctcgacctggtgccgggcttcatggagttcttcgacaacctgagcaaggaagag
cgcgcccaagtgtggggcatgaccttcgccctggacgacggcaagaacagcgacagcccg
ctggcccatctgcaaagcgagttcgccggcctggaacagcgcctcaacgagcgcctggtg
gagcgtctgcaacaggaacgcgacccggcgcggcgcgacctgatctacggtttcccgcag
cagttcggcgcgttgaaggattgcctgcaaggcttcctcgaaggcgtgttcaaacccaac
gcctttgaagagcgcgtcttgctgcgcggtgtgtacttcaccagcggcacccaggaaggc
agcccgattgaccgcttgatcggcgccatggcccagagcatgaacctggaccgccagcac
ctggcgcgccagaccggcaccgggcgcagttacttcatcgaaaaactgttcaccgccgtg
gcgtttgccgagcgtggcctggtgggcgtcaacccgaaggtcgagcgccgtcgcaagtgg
attgcccggggtgtgctggccgcaaccgtggcgctggtactggtcgtcagcacgttatgg
tgggtgagttatcgcgccaaccaggcctacatcgcccaggttgaccagaaggtcgcgccg
ttgggccagaccgtgcagaacctgagcccggcgcagcgcgaagtactcgcggtattgccg
ttgctcaatgcggtgaagaacctggcgggcgactcgccgagctggtccgaaggcttgggc
ctgtatcagggcgacatgctcgaagccgaatccgccagcgtctaccgcaagctgttgatc
gccgtgttcgcgccccgtttggtgacgcgcatcgaagagcaactgcacggcggcggcaat
tccgacttcctctatgaaggcttgaaggcctacctgatgctcgccgacagcgagcattac
gacccggacttcatcaaggcctggatcgccctcgactgggaccgcaacctgccgcgcgac
ctgccggcggaccaacggcaggccctgatcgggcacttgcaggccttgttcgagcggcat
ccgcccagcgcccgtctcgacccgcgcttgatcgacgacctgcgccggcaactgcagcaa
ctgccggtggcccagcgcgtctacgaccgcatcaagcgccagaaactgccggaaggcgtg
ccggactttcgcatcaacgaagcggcgggccgcgatgccgcgctggtgttcagtcgcaag
agcggcaagccgttgggcgaaccgttgagcggtttcttcaccgccaagggttatcgccag
ggcttcctgctgaccagcctgaaccagaccggcaccctcgctgaagagcaatgggtgctg
ggccgcgagcaggccgaccaacaaaacgtcgtcagcctcgccgccgatgtgcgccgcctg
tacttccaggactatcaacgccagtgggatgcgttgctggcggatatcgactttgtgccg
atcaccagcgtggcccaggcggccgacgtcttgcgggtgatttccgggccgacctcgccg
ctgaagaagctgctggtggcggtctccaaagagaccgacttgcaagcggaagaacgcttg
ctggccgccaagggcgcgccggtggaaggtggcgtggacaagctcaaggaacgcctcggc
agcctgcttggccaggaccagccaactgcgaatgcaccagcggccagtgaagatccggtg
acggcgcacttcgccgaactcaacagcatcgtcagcaagaacgaaggcgaaccggcggcc
atcgatggcctgctggcggacatgaacgcgctgtatgtgcaggtcagcgccatggtcggt
gccagtggcgatgcgttgctcggcgaagcgaaaaaccaggcggcggctgcggccacgcgg
gtcagcctgaatgccgaacgccagccgccgctggtgcagggcatggtcaagtcagtggtc
aactccaccaccaacagcatgatgggcggggtgcgcaaccagctgaatgcggcgtgggtc
agcgaagtggtgaacgtgtatcgccagtccctggccgggcgttatccgatgtcgcccggc
agtgcgcgggacgcgaccctggatgacttcggccagttcttcggggtgggcggggtgatg
gacaattacttccgcaagtacctgcaaccttacgtcgacacctccacgcaaacctggcgc
tggcagccgggcgcggcgcagaagctcggcatcgcgccgggcgtgctgcaaacgttccag
cgtgcggcgaccattcgggatgcgtttttccgtgccggtggcacccagccgatcgtgcgc
tttgaactcaaaccggtggcgatggacgcgaccatcacccagttcctgctggacctggac
ggccagcaactgagctatgaccacggcccgagccggccggtcgcgatgcagtggccgaat
cccggcagcattggcgtggtgcgcatttccatcatgccgccgtcagccagcgggcgctcc
ggcgtgacgctggacggcccgtgggcatggtttcgcctgctggagcaatcggacctgacc
gccggcaactcgccggaccgcttcaacctgcgtctgcgggtcgacggcgcgagcatctcc
tacgagttgcgggccaacagtgccttcaacccgttcaagagccgcgtgcttaacggcttc
agcctgccggagcggctatga
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