Pseudomonas sp. NBB: NY023_06170
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Entry
NY023_06170 CDS
T11765
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psnd Pseudomonas sp. NBB
Pathway
psnd03030
DNA replication
psnd03430
Mismatch repair
psnd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NY023_06170 (dnaE)
03430 Mismatch repair
NY023_06170 (dnaE)
03440 Homologous recombination
NY023_06170 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psnd03032
]
NY023_06170 (dnaE)
03400 DNA repair and recombination proteins [BR:
psnd03400
]
NY023_06170 (dnaE)
Enzymes [BR:
psnd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NY023_06170 (dnaE)
DNA replication proteins [BR:
psnd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NY023_06170 (dnaE)
DNA repair and recombination proteins [BR:
psnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NY023_06170 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WOB60049
LinkDB
All DBs
Position
1337976..1341500
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAAADPEAPLSRICFLAMNPKGYRNLTELISRGWTEGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMAMFPERFYVEVQRTNRARDEEY
VHAAVALADRFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRMYSDQQYLK
SAEEMTELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFEEADADVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRDTQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcgctggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtaaagttctacaagactgccatgggcgcgggc
atcaagccgatctgcggcgccgacctgtggctggccgctgccgacccggaagcaccgctg
tcgcgtatctgcttcctggccatgaaccccaaggggtaccgcaacctcaccgagctgatc
tcgcgcggctggaccgagggccagcgcaacggcctggtgatccttcagcgtgaatggatc
gccccggccagcgagggcttgatcgccctgtccgcaggcaaggaaggtgacatcggcatg
gccttgctggcggggcggcaagatgaagccgaggccctgctgcaggactggatggcgatg
ttccccgagcgcttctatgtcgaggtgcagcgcaccaaccgcgcccgcgacgaggaatat
gtgcacgccgccgtggccttggccgacaggttcggcgctccgctggtggcaaccaacgat
gtgcgtttcatcaagcaatcggacttcgatgctcacgaaacccgcgtatgcatcggtgag
ggctggaccctcgacgatccgcgccggccaaggatgtacagcgaccagcagtacctgaag
tcggccgaagaaatgaccgaactgttcagcgacctgcccgacgccattgccaacaccgtc
gagattgccaagcgttgcaacatccaggtgcagttgggcaagtacttcctgcccgacttc
cccacgcccaatggcatgggcatcgatgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggcagtgctgtggccgaaagagaccacgcccaactacgaagagaagcgc
caggtttacctggaccgcctgaagttcgaactggacatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggtgtgcctgtc
ggcccgggccgggggtcgggtgctggctcgctggtggcctatgtactgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgtgaccgggtgatcgactatgtg
gccgaagcctatggccgcaacgcggtcagccagatcatcaccttcggtaccatggcggcg
aaggcggtggtgcgggacgtggcgcgggtacagggcaagtcatacggtctagccgaccgc
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggaaaaggcctacgagcaggaa
gagatcctgcgcgacttcctcaagggtgacgaagacgcccgcgaaatctgggacatggcc
ctgaagctcgagggcgtgacacgcggtaccggcaagcacgccggtggtgtggtcatcgcc
ccgaccaagctcaccgacttctcgccgatcgcctgtgatgaagagggcggcggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatgtaaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgttgcagaaggccgaaaccacggcggtgttccagcttgaatcgcggggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcgttgttc
cgcccaggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctcgcctacccccatccggactaccagtacgaaggcctgaagccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggct
ggctataccctcggcggcgccgacatgctgcgccgtgcgatgggtaagaagaagcccgag
gagatggccaagcagcgcggtggtttcatcgaaggttgtgccaacaacaatatcgatgca
gacctggctggtaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcgtggctgaaaacccaccac
ccggcgccgttcatggctgcggtgttgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcgcctcgacgcgcccgacgtgaacttc
tccgacttcaagttcaccgtcaacaatgacgggcgcatcgtctacggcctgggcgccatc
aagggcgtcggcgagggcccggtggaggcgatcgtcgaggcccgcgcccagggtggccca
ttcaaggacctgttcgacttctgtgagcgcatcgacctcaaacgggtcaacaagcgcacc
ctcgacgcgctgatccgcagtggtgcgctggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgtgcaaccctgctctcggcgctgggc
gaggcaatcaaggctgccgagcaggccgcccacaccgctgacagtgggcacgttgacctg
ttcggcggcatgttcgaagaggcggatgccgacgtctacgccaaccaccgcaaggtgcgc
gaactgaccctcaaggaacgcctgaagggcgaaaaagacacccttggcttgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgccgcttcgcccgccagcgcatcatc
gacctcaagccgtcacgcgatacccagaccatcgccggcatgatcattgcccttcgggtg
atgaagaacaagaagggtgacaagatgggcttcgtcaccctggatgaccgctccgggcgc
atcgaggcgtcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gccatggtggttgtcgaaggcgaggtcagcaacgacgatttctccggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcacacgaagcgctcaagggcgaccggctgaagtggctgggcgagttgatt
acccgccatcgcggcgcttgcccgatcactctcgaatacaccggcagcgacgccaaggcc
atgctgcagttcggcgagcagtgggctatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
DBGET
integrated database retrieval system
