Pseudomonas sp. NBB: NY023_16080
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Entry
NY023_16080 CDS
T11765
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psnd Pseudomonas sp. NBB
Pathway
psnd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psnd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NY023_16080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnd03021
]
NY023_16080
Transcription machinery [BR:
psnd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NY023_16080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
WOB56753
LinkDB
All DBs
Position
complement(3446865..3447374)
Genome browser
AA seq
169 aa
AA seq
DB search
MIDAAPPPEHSLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIRE
PRAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDG
LKAPVRKAFLWSQLEGLGYAEIGKRLGVCERSVKRYMAQAYEHCLLAEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgccgcgccgccaccggagcatagcctgcctgccctgtaccgggaacaccgc
ggctggctggaaacctggctgcggcggcgcatgggcaatgcctgggatgccgccgacctc
agccaggataccttcctgcgtatcctggccagcgcccagccgctggcagacattcgcgaa
ccgcgtgcctacctgctgaccgtgggcaagcgcctgctgagcaacttccaccagcggcgc
agcctggaacaagcctacctcgatgcactggcgcagttgcccgagcagcatgtgccctcg
ccagagcagcgttgggtactgctggaaaccctgcaagccctcgacgagttgctcgacggc
ctcaaggcgccggtacgcaaggcctttctctggagccagctggagggcctgggctatgcc
gagatcggcaagcgcctgggcgtttgcgagcgctcggtcaaacgctacatggcgcaggcc
tacgagcattgcctgctggccgaactgtaa
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