Pseudomonas sp. NBB: NY023_23665
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Entry
NY023_23665 CDS
T11765
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psnd Pseudomonas sp. NBB
Pathway
psnd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NY023_23665 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psnd03400
]
NY023_23665 (recD)
Enzymes [BR:
psnd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NY023_23665 (recD)
DNA repair and recombination proteins [BR:
psnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NY023_23665 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
NAT10_TcmA_helicase
AAA_22
SH3_13
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_17
T2SSE
AAA_28
nSTAND3
NTPase_1
AAA_5
PhoH
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WOB58159
LinkDB
All DBs
Position
complement(5104638..5106713)
Genome browser
AA seq
691 aa
AA seq
DB search
MSRSLVDLLPTPLHAEHLLALAPQHDSGDLLQLLDRWVERGWLRALDRAFVSFLEELAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALTGPLLLPSQLLADLD
LHAWRQRIAASPLVAAGDTSGQQARPLVLSGERLYLRRYWSYERRIDHTLRQRLTQSEAP
PADLRGRLAQLFDGGTPAGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGCYSSATEAWLEQIGGESLAGSGLKAGDEQRNPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDSHAARNLLATPPPDVHSLALKHEQDRAFDRLLLDGLNRGSDGPQG
YRSYLRTLGRFRPALDTAVDDPAWEQWAGKVLHSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDERGEPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagcctagtcgacctgttgcccaccccgctgcacgccgagcacctgcttgca
ttggcgccacagcatgacagcggtgacctgctgcaactgctcgaccgctgggtagagcgc
ggctggctgcgtgccctggaccgagcgttcgtatcattcctggaggagctagcccccggt
agtgacccactgctgttgctggccgccgccctggccagccaccaactgggccacggccat
gtctgcctcgacctgcagcagaccctggccgagcccgatttcgccctgtccttgccgcct
gaaggcgacgccttgaccggccccttgctgctgccttcgcagttgctcgccgacctcgac
ctgcacgcctggcgccagcgcattgccgccagtccgctagtggccgccggcgatacttcg
gggcagcaagcgcggcctctggtgctcagcggagagcgcctgtacttgcgccgttactgg
agttacgagcggcgcatcgaccatacacttcgccagcgcctgacccagtccgaagcgccc
ccggccgacttgcgtggccgcctggcgcagctgtttgacggcggtacgccggctggccag
gtggactggcagaagctcgcctgcgcccttgccacccgcgcaggcttcagcatcatcacc
ggcggccccggcacgggcaagacaaccaccgtggtacgccttttggccttgctgcaggcg
ccggcggtggagcagggcaggccattgcgcattcgcctggccgcgccgaccggcaaggcg
gccgcgcgcctgaccgaatccattggccagcaggtcgagcgcctgcaggtcagcgccgag
gtgcgcgggcagatccccaccgaggtcagcaccgtgcaccgcctgctcggcagccgcccc
ggttcgcggcacttccgccaccatgccggcaacccgctgccgttggacgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccctgccgcca
cgggcacgtctggtactgctgggcgacaaggaccagctggcctcggtcgaagccggtgcg
gtactgggtgacctgtgccgggatgccgaggagggctgttactcgtcggcgaccgaggca
tggctggagcagatcggtggcgagtcgctggcgggcagcggcctcaaggccggcgatgag
caacgcaacccgttggcccagcaggtggtgatgctgcgcttctcgcggcgttttggcgaa
ggcagcggcattggccaactggcccggctggtcaatcgccaggactcccacgcggcccgc
aacctgttggccacgccgccgcccgatgtgcatagcctggccctgaagcacgaacaggac
cgcgccttcgaccgcctgctgctcgacgggctgaaccgcggcagcgacggcccgcagggt
tatcgcagctatctgcgcacccttggccgcttccgcccggcactcgataccgccgttgac
gaccccgcctgggagcaatgggcgggcaaggtgctgcacagcttcgaagacttccagctg
ctgtgtgcggtacgccgcggcgcctggggtgtcgaaggcctcaacgagcgggtggcgcgg
gtactgcacaatgccgggctgatcgacagccagcagccctggtacgaagggcgcccggtg
ctggtcacccgcaatgactacggcctgggcctgatgaacggtgacatcggcatcgccctg
cgcctgccggacgagcgcggcgaacccttactgcgcgtggccttcccgcgtaacgacggc
agtgggggcgtgcgcttcgtcctgcccagccggctgaacgaagtggaaacggtattcgcc
atgaccgtgcacaagtcccagggctcggagttcagccacaccgcgctggtgctgccggat
gcgctcaacccggtgctgaccaaggaactggtatacaccggcatcacccgcgccaagcat
tgcttcagcctggtcgagcctcgccagggtattttcgaagaagcggtcgcgcgcaaggta
cggcgtatttccggattgatgctggagcaggtctga
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