Pseudomonas sp. NBB: NY023_26520
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Entry
NY023_26520 CDS
T11765
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psnd Pseudomonas sp. NBB
Pathway
psnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NY023_26520 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psnd03021
]
NY023_26520 (rho)
03019 Messenger RNA biogenesis [BR:
psnd03019
]
NY023_26520 (rho)
Transcription machinery [BR:
psnd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NY023_26520 (rho)
Messenger RNA biogenesis [BR:
psnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NY023_26520 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WOB58688
LinkDB
All DBs
Position
complement(5756030..5757289)
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AA seq
419 aa
AA seq
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MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatcttttggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaaacaggacgtgattttcgccctgctgaag
aagcacgcgaaaagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttcggctgatgcgtcctacctggccggccctgacgatatctac
gtctcgcccagccagatccgccgcttcaacctgcgtaccggcgacaccatcgtcggcaag
atccgcccgccgaaggaaggggagcgttacttcgccttgctgaaggtcgacaccatcaac
ttcgaccgcccggaaaacgcgaagaacaagatcctgttcgaaaacctgacgccgctgttc
ccgaacaagcgcctgaagatggaagccggtaacggctccaccgaagacctgaccggccgc
gtcatcgacctgtgcgccccgatcggcaaaggccagcgtggcctgatcgttgctccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacttgatcgtcctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctccaccttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtaatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctggactcgatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgacgcccacgccctggagaagccgaagcgcttc
ttcggcgccgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgctaccgcgctg
gtcgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgcctctggaccgccgcatcgccgagaagcgcgtgttcccggccatcaacatc
aaccgctccggtacccgccgcgaagagctgctgactgccgacgacgagctgcagcgcatg
tggatcctgcgcaagttgctgcacccgatggacgaaatcgccgccatcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaagcgcaagtaa
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