Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_00815
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Entry
NIBR502771_00815 CDS
T06121
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NIBR502771_00815
09124 Replication and repair
03420 Nucleotide excision repair
NIBR502771_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psni03021
]
NIBR502771_00815
03400 DNA repair and recombination proteins [BR:
psni03400
]
NIBR502771_00815
Enzymes [BR:
psni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIBR502771_00815
Transcription machinery [BR:
psni03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NIBR502771_00815
DNA repair and recombination proteins [BR:
psni03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NIBR502771_00815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QDG60996
LinkDB
All DBs
Position
178834..180480
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AA seq
548 aa
AA seq
DB search
MTDGPLIVQSDKTILLEVDHELATEARHAIAPFAELERAPEHMHSYRLTPLGLWNARAAG
LDAEKVLDALLKYSRFPVPHSLLIDVEETMSRYGRLRLEKDPRHGLVMRTDDYPVLEEVI
RAKKIAPLLGPRIDGETVVVHASQRGQLKQLLLKIGWPAEDLAGYVDGTPHLISLNQDGW
ELRPYQRLASENFWAGGSGVVVLPCGAGKTLVGAAAMATGSTTTLILVTNTVAARQWKDE
LLRRTSLTEEEVGEYSGALKEVRPVTIATYQVLTTKRGGIYPHLELVDGHDWGLIIYDEV
HLLPAPIFRMTADLQARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWKDIESQGYIAP
ADCVEVRVDLPKDERVAYAMADDADKYRLCATSESKTLVVEQLVARHAGEQLLVIGQYID
QLDELGERLEAPVIKGDTPVKVRQKLFDAFRSGELQTLVVSKVANFSIDLPEASVAIQVS
GSFGSRQEEAQRLGRLLRPKKDGRAARFYSLVARDTLDQEFAAKRQRFLAEQGYAYRIMD
AKDVHAAE
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggacccctgatcgtccaaagcgacaagaccatcctcctcgaggtggaccac
gaactggccaccgaggcccggcatgccatcgcgcctttcgccgagctggaacgggcaccc
gagcacatgcacagctaccggctgaccccgttggggctctggaacgcgcgcgccgccggg
ctggacgcggaaaaggtgctggacgccctcctgaagtattcacgcttcccggtcccgcat
tccctgctgatcgacgtcgaggaaaccatgtcccggtacggccggctgcgcctcgaaaag
gatccccgccacggcctggtcatgcggacggatgactacccggtcctggaggaagtaatc
cgtgccaagaaaatcgcaccgctgctggggcccaggatcgacggtgagacggtggtggtg
cacgcctcccagcgcggccagctcaagcagctgctgctgaagatcggctggcctgcggaa
gaccttgccggctacgtggatggcaccccgcaccttatttccctcaaccaggacggttgg
gagctccgcccctaccagcgcctggccagcgagaacttctgggcaggcggcagcggcgtg
gtggtacttccctgcggcgcgggcaagaccctggtgggagccgctgcgatggccaccgga
tccaccaccacgctgatcctggtcaccaacaccgtggcggcccggcagtggaaggacgaa
ctgctccggcgcacctccctcaccgaggaggaggtgggtgaatactcgggcgcgctcaag
gaagtgcggccggtgaccatcgccacctaccaggtgctcaccaccaagcggggcggcatc
tacccgcacctggaactcgtcgacggacacgactggggactgatcatctacgacgaggtc
cacctcctgccggcgccgatcttccggatgaccgcagacctgcaggcccggcggcgcctt
gggctcaccgcgacgctggtccgggaggatgggcgcgagggcgaggtcttcagcctcatc
gggcccaagcgctacgacgcgccgtggaaggacatcgagtcgcagggctatatcgcaccg
gcagactgcgtggaggtccgtgtggacctgcccaaggatgagcgggttgcctatgcaatg
gccgacgacgcggacaagtaccggctctgcgccacgtccgagtccaaaacgctggtggtg
gaacagctggtggcgcggcacgccggagagcagttgctggtcatcggccaatacatcgac
cagcttgacgagctcggcgagcgcctggaggcacccgtcatcaagggcgataccccggtg
aaggtccggcagaagctctttgacgcgttccgctccggggaactgcagaccctggtggtg
tccaaggtggctaacttctccatcgacctgccggaggcctccgtggccatccaggtttcc
ggctccttcggttcccggcaggaggaagcacagcggctgggccggctgctgcggcccaag
aaggacggccgcgccgcccgcttctactccctggtggcccgggacaccctggaccaggag
tttgctgccaagcgccaacggttccttgccgagcagggttacgcctaccggatcatggat
gccaaggacgtgcacgccgcggagtag
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