Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_10200
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Entry
NIBR502771_10200 CDS
T06121
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psni03016
]
NIBR502771_10200
Enzymes [BR:
psni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NIBR502771_10200
Transfer RNA biogenesis [BR:
psni03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NIBR502771_10200
Prokaryotic type
tRNA splicing ligases
NIBR502771_10200
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDG62652
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All DBs
Position
2180264..2181430
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AA seq
388 aa
AA seq
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METISPKLLNWASILDDKTREQAVMTASLPFIYPHLALMPDAHLGKGATVGSVIPTLRTI
IPAAVGVDIGCGMIAVRTQYSVRELPKDRKSLREAIERVIPLSAGHNNKQVLPTAEPRIA
DLKQRATKAGFNPAQYVARWELQLGSLGSGNHFIEISADEDDGVWLFLHSGSRGVGNRIA
QHHIQVARQISRKHQVHLPDPDLAYLDEGTPQFDRYIAELRWAQHFALLNREEMMDRVAA
EFSRWVGGPVQERERINCHHNFTEQETHYGKSVWVSRKGAIKAALGDPGLIPGSMGTASY
VVEGRGNPASLNSSPHGAGREYSRNAARNAFTLEELKRAMRGIEFRASEAFIDEIPAAYK
PIDQVMQDAADLVTVRHTLRQLVNVKGN
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagaccatcagcccaaagctgctcaactgggcatccatcctggacgacaagacccgc
gagcaggcagtcatgaccgcaagcctgcccttcatctacccgcacctggcgctgatgccg
gacgcgcacctgggcaagggcgccaccgtgggctccgtcatccccacgctgcgaaccatc
atcccggcagcagtgggcgttgacatcggctgcgggatgattgctgtgcgcacccagtac
tccgtgcgggagctgccgaaggaccgcaaaagcctccgcgaggccatcgagcgggtcata
ccgctctccgccgggcataacaacaagcaggtgctgcccacggctgagccccggattgct
gacctgaagcagcgggccacgaaggcaggcttcaacccggcacagtatgttgccaggtgg
gaattgcagttggggtccctgggctccgggaaccatttcatcgaaatctccgcggatgag
gacgacggcgtgtggctgttcctgcattcgggctcgcgcggcgtcggcaacaggatcgcc
cagcaccacatccaggtggcccggcagatcagccgcaagcaccaggtgcacctgccggac
cccgacctggcctacctggacgagggaaccccgcagttcgaccggtacatcgccgagctg
cgctgggcccagcacttcgccctgctgaaccgggaggaaatgatggaccgcgtggccgcg
gagttcagccgttgggtgggcgggccggtccaggaacgcgaacggatcaactgccaccac
aacttcaccgagcaggagacgcactacggcaagtccgtgtgggtgtcccgcaagggcgcc
atcaaagccgccctcggcgatcccgggctgatccccggatccatgggaacggcgtcgtat
gttgtggaaggccggggcaacccggcgtcgttgaactcctccccgcatggggcggggcgt
gaatactcccggaacgcagcccggaacgccttcaccctggaggagctgaagcgcgccatg
cggggcattgagttccgcgcctcggaggccttcattgacgaaatcccagccgcgtacaag
ccgatcgaccaggtcatgcaggacgcagcggatctggtgacagtgcggcacacgctgcgg
cagttggtcaacgtcaagggcaactga
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