Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_10485
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Entry
NIBR502771_10485 CDS
T06121
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIBR502771_10485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psni03019
]
NIBR502771_10485
03009 Ribosome biogenesis [BR:
psni03009
]
NIBR502771_10485
Enzymes [BR:
psni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIBR502771_10485
Messenger RNA biogenesis [BR:
psni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIBR502771_10485
Ribosome biogenesis [BR:
psni03009
]
Prokaryotic type
rRNA helicases
NIBR502771_10485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Ribosomal_L12_N
Motif
Other DBs
NCBI-ProteinID:
QDG62703
LinkDB
All DBs
Position
2237860..2239929
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AA seq
689 aa
AA seq
DB search
MPENQNETTAVIEDAPVAAAEAPVTAPAAEAPAAEAPAAEAPATAAPAADEDENTVKFAD
LGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAE
LHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRR
GAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQVA
LFSATMPGQIRRMSKQYLNNPAEVQVKSKTTTGANTRQRYLQIMGPQKLDALTRILEVED
FDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDV
AARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGEAILFMTPREKYLLRSIEKAT
RQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAAFRDLIASYEEEHNVPAAEIAAA
LAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRALTEGNATYRIAVGRRQRVMP
GSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSQEQLRALSRTRIGGELIHLELDN
GRKPSGDRGAYQGNRGGNFKGNGGFKKEFRKNDGERSSADRGGRSYSERSFSDRGQAGDS
RFGGHGDGSRKPRSGGDSGHRDFNRKGKW
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaaccagaacgaaaccaccgctgttatcgaggacgcccccgtggctgccgcc
gaggctcccgtaaccgctcccgccgctgaagcccctgctgctgaggctcccgctgctgag
gcgcctgccacggccgcccctgccgcggacgaagacgaaaacaccgtcaagttcgccgac
ctcggcatcgacggccgagtcctggccgccctgcaggacgtcgggtacgagaagccgtcc
cccatccaggccgccaccatcccgctgctgcttgaaggccgcgacgtggtgggcctggcc
cagaccggcaccggtaagactgcagcattcgcagtaccggcactgtcccgcctggccgag
ctccacgacctcaacggcccctcccgcaagacccaggccctggtcctggcccccacccgc
gagctggcgctgcaggttgccgaggccttcacctcctacgccaagcacattgacgacttc
accgtcctgccggtctacggcggctccgcctacgggccccagctggcgggccttcgccgc
ggcgcccaggtggttgtgggtacccccggccgcgtgatcgaccacatctccaagggttcc
ctggacctgtccgaactccagtacctggtgctggacgaggctgacgagatgctgcggatg
ggcttcgccgaagacgtggagcagatcttccagcagaccccggaggaccgccaggtggcg
ctgttctcggccaccatgccgggccagatccgccggatgtccaagcagtacctcaacaat
ccggctgaggtccaggtcaagtccaagaccaccaccggagccaacacccggcagcggtac
ctacagatcatgggcccgcagaagctggacgcgctgacccgcatccttgaggtggaagac
ttcgacggcgtcatcgctttcgtgcggaccaagatggccaccgaggacctggctgacaag
ctgaagtcccgcggattccaggctgccgccatcaacggcgacatcccgcagcagcagcgc
gagcgcaccgttgacgcgctgaaggaaggccggatcgacatcctggtggccaccgacgtc
gccgcccgtggccttgacgtcgagcggatcagccacgtcatcaactacgacatcccgcat
gacaccgagtcctatgtgcaccgcatcggccgcacgggccgtgccggccgttccggcgag
gcgatcctgttcatgacgccacgggagaagtacctgctgcgttccatcgaaaaggccacc
cgccagccggtggaacagatgcacctgcccacggccgagaccgtgaatacgctgcgcctg
ggcaagttcgccgagcgcatcaccgagaccctcgcctccgaggacgtcgcggcgttccgc
gacctcatcgcctcctacgaggaagagcacaacgtcccggcagcggagatcgctgcggcc
cttgccgtcatggcgcagggcggccagccgctgctggtcaaggaactgcccgccgctcca
gaattccagaagcgcgaacgctccaaggacggcttcggctcacgtgggccgacccgtgcg
ctgaccgagggcaacgccacctaccgcatcgcagtgggccgccgccagcgcgtcatgccc
ggctcgatcgtgggcgccatcgccaacgagggtggcatctcctccgcacagatcggcggc
atcgacatccgctcggaccactccctggtggagctgcccgcggacctgagccaggaacag
ctgcgcgcgctgtcccgcacccggatcggcggcgagctgatccacctcgagctggacaac
ggccgcaagccctccggcgaccgcggcgcctaccagggcaaccgcggcggcaatttcaag
ggcaacggcggcttcaagaaggagttccgcaaaaacgacggcgagcggtcctcggctgac
cgtggcggccgttcctacagcgagcgttccttcagcgaccgcggccaggccggggactcc
cgcttcggcggccacggcgacggttcccgcaagccccgcagcggcggcgacagcggacac
cgtgacttcaaccgcaagggcaagtggtaa
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