Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_10810
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Entry
NIBR502771_10810 CDS
T06121
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIBR502771_10810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psni03021
]
NIBR502771_10810
03400 DNA repair and recombination proteins [BR:
psni03400
]
NIBR502771_10810
Enzymes [BR:
psni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIBR502771_10810
Transcription machinery [BR:
psni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIBR502771_10810
DNA repair and recombination proteins [BR:
psni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIBR502771_10810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QDG62759
LinkDB
All DBs
Position
2303384..2307283
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDADIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLENFDMQAESDLLRDVIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRKGSAGEGR
IFSSVSEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEPGQPALVQTSLGQVVFN
QTLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPEILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNDIATVMRESLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGNVLAAAGTDCGDVVIAELFKAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSAGGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGTEEIAYPVLRRSRLLIED
GDHVAVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcgtacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgtcccgcgactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaagtcacccgcgccaaggtccgccgtgagcgcatgggccacatcgaactggccgccccc
gtcacgcacatctggtacttcaagggtgttccgtcccgcctgggctacctccttgacctg
gcaccgaaggacctcgaaaaggtcatctacttcgctgcctacatgatcaccagcgtcgac
gaagctgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgacgccgatatcgccgcgattgcccgcgaccttgaaggcgaa
attgcccgcctcgagggcgaaggcgccaaggctgccgacaagaagaaggcccgcgactcc
gccgaccgccagatggccaacgtgcgcaagcgtgccgatgccgacatcgaacgcctcgag
caggtctgggaccgcttcaagaacctgaaggtcgccgacctcgaaggtgacgagggcctg
taccgcgaactgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaggcc
atcaagaagcggctcgagaacttcgacatgcaggccgagtccgacctgctgcgcgacgtc
atcgccaacggcaagggccagcgcaagacccgcgccctgaagcggctcaaggtggtcaac
gcattcctgaccaccaacaacagcccgctgggcatggtcctcgacgccgtcccggtgatc
ccgccggaactgcgccccatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgcccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgcttccgccagaacctcctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtcggccaagcggatggtggagcgctaccgc
ccgcaggtctgggacgtgctcgaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctgggcatccaggcgttcgagccgcagcttgttgaaggcaag
gcaatccagctgcacccgctggtttgtggcgcgttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgagccccgaggcgcaggctgaggcccgcatcctgatgctt
tcctcgaacaacatcctgaagccctctgacggacgcccggtcaccctgccttcgcaggat
atgatcatcggcctgtaccacctgaccaccaagcggaagggttccgccggcgaaggcagg
atcttctcctccgtatcggaagccatcatggccttcgatgcacgcgagcttcacctgaac
tcgcaggtcaagatccggctcgaaggattcgttccctacgccggctgggaagccccggaa
ggctgggagcccggtcagccggcactcgtccagacctccctgggccaggttgtgttcaac
cagaccctgcccgaggactacccgtgggttgaagccgttgccgacaagggcgaactgtcc
cggatcgtcaacgacctcgccgagcgctaccccaaggtcgtcaccgcggcaacgctggac
aacctgaaggatgccggtttctactgggcaacccgttcgggcgtcaccgtcgccatctcc
gacatcgaggttcctgctgccaagccggaaatccttgccgggtacgaggaacgcgccgcc
aagatccagggccagtacgacaagggcctgatcgacgacgacgagcgccgccaggaactg
atcgagatctggaacaaggcaaccaacgacatcgccaccgtgatgcgtgagagcctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgccagatcgcgggtatccgtggcctggtggccaacccgaagggtgagatcatcccgcgc
cccatcaagtcctcctaccgcgagggcctgtcggtgctggaatacttcatcgccacgcac
ggtgcccgtaagggcctggccgataccgcactgcgtaccgccaactcgggttacctgacc
cgtcgactggtggacgtctcgcaggacgtcatcgtccgtgaagaggactgcggcaccgag
cgcggcctggtcacgcccatcgctgtcgccgattccaacggtgagctggtcctggacgag
aacgtcgagaacagcgcctacgcacgtacgctggccgtcgacgtcgtcgactccgagggc
aacgtcctcgcagccgccggcaccgactgcggcgacgtcgtgatcgctgagctcttcaag
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggcacc
tgcgccctgtgctacggccgctcgctggccaccggcaagaccgtggacatcggcgaggcc
gttggcatcatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtttccgccggcggtggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgtcgcgccgattgctgaagca
gccggccgcatcaccattgaagagtccgagcgccagatgcgccttgtcatcactccggat
gacggaacggaagagatcgcctacccggtcctccgccgttcacgcctgctgatcgaagac
ggcgaccatgtcgccgttggccagaagctgatcaacggtccggtggaccccaagcaggtc
ctgcgcatcatgggtccgcgtgcggcacagaagttcctcgtggacgaagtgcagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggtcatcgtccgccagatg
ctgcgccgcgtcactgtcatcgagtccggcgaatcggacctgctgcccggcgaactcgcc
gagcgcagccgcttcgaagacgccaaccgccgcgttgtgtccgagggcaagactccggct
tccggacgtcctgaactcatgggcatcaccaaggcgtcgctggccaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctcggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggtctcccgcgctacaccgaggtcaccgtggagcccactgaggaagcaaaggccaac
ctgttcaccggccccagcgcgttcagtgacttctcgtacgacaccctgggtggtgacgga
gctcccgagttccacgccatcccgctggacgactacgacctgggcaacgacttccggtaa
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