Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_13685
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Entry
NIBR502771_13685 CDS
T06121
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIBR502771_13685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psni03019
]
NIBR502771_13685
03009 Ribosome biogenesis [BR:
psni03009
]
NIBR502771_13685
Enzymes [BR:
psni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIBR502771_13685
Messenger RNA biogenesis [BR:
psni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIBR502771_13685
Ribosome biogenesis [BR:
psni03009
]
Prokaryotic type
rRNA processing factors
NIBR502771_13685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QDG63269
UniProt:
A0A4Y6QS45
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All DBs
Position
2923840..2927244
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AA seq
1134 aa
AA seq
DB search
MENDQELAVNDEAAAAAPKRAPRTRRKAAPKTGHAPADAVTSAPDADSAPGGDPAGQETA
VEATTVDATAAEEAGTAQEAPARRTRARKKADTAEPLPAFAADAERAAEVATVDAPAAVP
DPGADSPAVPAQEATADPETKPVRRRRVATRKAASPAVAPAADSAGTAGETPASAAPEAV
LPEAADQIAEQDVEQANVPAGQEAVPATEGAPAPEQPTEAPAVEDGEAAAAASPFGSLFL
EPASPTSVLFQAPDLSTVVRPAAPAAAEPEEEESEDAEDSSSRRRRRSRGRRGRSRIGGT
AEEDNEDSGSDAEDESDEDNAGQVEDGVTSRRRRRRRRGDQDLELTGGEDDDPPNTVTRV
RAPRAVSEAPVNNRVTSVKGSTRLEAKKQRRRESRDTGRRRTVITEAEFLARRESVDRQM
IVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRN
AVLYAGEVNWEAVNLEGKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQISLPGRYLV
YVPGGSMTGISRKLPDVERNRLKRILKDRLPEHAGVIVRTAAEGASEEELTHDINRLRAQ
WEGIESQSTSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVA
PDLVGRLEKWTKDQDIFSAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKF
TGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLG
RDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDPVEHRRANTVA
AEHHVQRTDNRPETRAEARPEAQRNDAQPGVRSERKRRRGRGGQQPEAAPAPAVHVHTVQ
PDPSDAERHAKAEATRLALANIAAAAHAAHLHDDEVAAARQVPAAEPAQVPVEEKHDADA
PARPAAVLTFGGEEVPLPFVEHAGEQHPKPALTLDRLAEAFAHLGQPASPVGDAPASQAE
ALQAAEEAAPEQPAGAGAAGARAGAAPEASPEKDYSDHTLEQSRQRRPRRHRAASRAQGA
ANETAVQHHENVQADAGGHSHAAKAPEPAKDQPEPRKAAEEPIILGVGVPASEL
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgaccaggaactcgccgttaacgatgaagcagcggctgccgcgcccaagagg
gcaccgcggacccgccgcaaggcggcacccaaaaccgggcatgcccctgcggatgccgtg
accagcgcaccggatgccgattcggcccccggtggagacccggccggtcaagaaaccgcg
gttgaagcaaccactgtggacgcaaccgctgccgaagaagccggcactgcgcaggaggcg
cccgcccggcgcacccgggcccggaagaaggccgacaccgcggaacccctgcctgccttc
gccgctgacgcggagcgtgctgccgaagtggcgaccgttgacgcgccggccgcagttccg
gaccccggcgccgacagccctgccgttcctgcccaggaggcaacggcagatcccgaaacc
aagccggtccgccgccgtcgggtagccacccgcaaggctgcctctccagccgtcgccccc
gcagccgactccgcgggaacggctggtgaaacacctgcctccgcagccccggaggcagtg
ctgccggaggccgctgaccagatcgcggaacaggacgtggagcaggcgaacgtgcccgcc
gggcaggaagccgttcctgcaacggaaggggctccggcaccggagcagcccacggaagcg
ccggcagtggaagacggcgaggccgccgctgccgccagccccttcggctccctgttcctg
gaacccgcttcccccacctcagtactcttccaggccccggacctcagcaccgtagtccgg
cccgcagcgccggccgccgcggagcctgaggaagaagaatccgaagacgccgaggattcc
tccagccgccgccgtcgccgcagccgtggccgcaggggccgcagccgcatcggtggtacg
gcggaggaggacaacgaggacagcggttctgatgctgaggacgagtccgacgaggacaac
gcaggccaggttgaagacggcgtgacgtcccgccgccgccgtcgccgccgccgcggtgac
caggaccttgagctgaccggtggggaagacgacgatccgcccaataccgtgacgagggtc
cgtgcgccgcgcgcggtcagtgaagcgccggtcaacaaccgggtcaccagcgtcaagggc
tccacccgccttgaggccaagaagcagcgccgccgcgaatcccgcgacaccggccgccgc
cgcacggtgatcaccgaagccgagttcctggcccgccgcgaatccgtggaccgccagatg
atcgtgcgccagcgcgatgacagaatccagatcggcgtcctcgaagacggcgtcctggca
gagcacttcgtgtccaagacccagcaggattcgttgatcggcaacgtgtacctgggcaag
gtccagaacgtgctgccatccatggaagcggcgttcgtggacatcgggcgcggccgcaac
gccgtcctgtacgccggcgaggtcaactgggaagccgtcaaccttgagggcaagcagcgg
cgcattgagaacgcgctcaagtccggcgacaccgtgctggtccaggtcaccaaggacccg
gtgggccacaagggtgcccgcctcaccagccagatctcgctgcccggccgctacctggtg
tacgtccccggcggttccatgacgggcatctcccggaagctgcccgacgtcgaacgcaac
cggctcaagcgcatcctcaaggaccgccttcccgagcacgccggcgtcattgtccgcacc
gccgccgagggcgcttccgaggaagagctcacgcacgacatcaaccggctgcgcgcccag
tgggaaggcatcgaaagccagtccacctccaccaagatcctggcccccgagctcctctac
ggcgaacccgacctgaccatcaaggtggtccgtgacgtcttcaacgaggacttctccaag
ctcatcgtttccggcgaggaggcctgggacaccatcgaggcctacgtcacctacgtggcg
ccggaccttgtgggccggctcgagaagtggaccaaggaccaggacatcttctccgcctgg
cgaatcgacgaacagatccacaaagccctcgaacggaaggtcttcctgccctccggcggc
tccctggtgatcgaccgcaccgaggccatgaccgtggtggacgtcaacacgggcaagttc
accggcagcggcggcaacctcgaggaaaccgtcaccaagaacaacctcgaagcggccgag
gaagtggtgcgccagctgcggctgcgcgacatcggcggcatcatcgtgatcgacttcatc
gacatggtgctcgaatccaaccgcgacctggtcctgcgccgcctggttgagtgcctgggc
cgcgaccggaccaagcaccaggttgccgaagtgacctcactcggactggtccagatgacg
cgcaagcgcatgggcaccggcctgctggaggtgttcggcgagcagtgcgaggcctgcgcc
ggccggggcgtcgtgacccacgacgaccccgtggagcaccgccgggccaacacggtggcg
gccgagcaccacgtccagcgcaccgacaaccggcccgaaacccgtgcggaggcccgcccg
gaagcgcagcggaacgacgcccagcccggcgtccggtccgaacgcaagcggcggcgggga
cgcggcggccagcagcccgaggctgccccggcacctgccgtccatgtccacaccgtccag
ccggacccgtccgacgccgagcggcacgccaaggcggaggcaaccaggcttgccctggcg
aacatcgccgctgccgcccatgcggcccacctgcacgacgacgaggtagcggctgcccgg
caggtgccggccgcggagcctgcgcaggtacccgttgaggagaagcacgacgccgatgcc
ccggcacgtcccgcagccgtcctcacgttcggcggcgaggaagtcccgcttccgttcgtg
gagcacgccggggaacagcatccgaagcctgccctgacgctggaccggcttgcggaagca
ttcgcacacctgggccagccggcctcccctgtgggggacgcgcctgccagtcaggcagag
gctctgcaggcagcagaagaggcagcaccggagcagccggccggggcaggggcggcggga
gcccgcgccggtgccgctcctgaggcgtcccctgaaaaggactattcggaccacacgctg
gagcagtcccggcagcgccggccccggcgccaccgggccgccagccgtgcccagggtgcc
gccaacgagaccgccgtccagcaccatgaaaacgtccaggctgatgccggtgggcactcg
cacgcagcgaaggcccccgaacccgcgaaggaccagccggaaccgcggaaggcggccgag
gaacccatcatcctcggcgtcggggtgcctgcctcggaactctag
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